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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aactcttgcatcattgaattggtagtttcattggatatttttggaagagttccaaaagacgctcatttgccattgtatatgtaatgctaatcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAGTTTGCTCGTGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACA

Basic information

species Vitis vinifera
transcript Vv19s0015g01070.t01
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G007555_T01 (Zea mays), 3'ss of exon 4
------aactcttgcatcattgaattggtagtttcattggatatttttggaagagttcca-aaagacgctcatttgccattgtatatgtaatgctaatcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAGTTTGCTCGTGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACA
      ||   | ||  ||   || | || | | | |    |   ||| |   | |   | |||     |||| | || |  |||      | ||  ||  ||| |||||||||| ||||||||||||||||| || |||||  | || ||||| || |||||||||||||| || || ||||| || || || ||  | || || |
tgtagaaaaattagctgcacgaaaattgtgggtccctgatcttgcttttggttactgatataaaagtaatcatgtccc-taatat------tccttgtcccttgcagGTATTTGATTTGTTTGACACAAAGCACAATGGAATTTTAGGATTTGAAGAATTTGCTCGTGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGA

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GRMZM2G173424_T02 (Zea mays), 3'ss of exon 4
----aactcttgcatcattgaattggtagtttcattggatatttttggaagagttccaaaagacgctcatttgccattgtatatgtaatgctaatcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAGTTTGCTCGTGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACA
    ||   | ||  ||   || | || | | | |    |   ||| |   | |   | || |   |    || |  |  |||| |    ||  || ||||||||||||||| || |||||||||||||| |  |||||  | || ||||| || |||||||||||||| || || ||||| || || || ||  | || || |
tagaaaaattagctgcacaaaaattgtggatccttgatcttgcttttggttactgatataaaagtatatcatgtcccta-atatttt---cttgtccattgtagGTATTTGATTTATTTGACACAAAGCACAGTGGAATTTTGGGATTTGAAGAATTTGCTCGTGCTCTCTCAGTATTTCATCCTAATGCTCCCCTTGATGAGA

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA18G08230.1 (Glycine max), 3'ss of exon 5
aactcttgcatcattgaattggta-gtttcattggatatttttggaagagttccaaaagacgctcatttgccattgtatatgtaatgctaatcaattg---tagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAGTTTGCTCGTGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACA-
   |   | || |||  |    ||  |||  ||  | | ||     | | |||      ||      |||  ||   ||||| | | ||    || |    ||||||||||| || |||||||||||||| || || ||||| || ||||| ||||||||||||||||| || |||||||| || || || ||||| || || | 
tgtttacgtattatttcaacattatattttgttcaaaaattgattcacaattc-----aacttgtgattggaatctaatatgaacttctctctaactctattaggTATTTGATTTATTTGACACAAAGCACAATGGGATACTAGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTTCATCCAAATGCCCCTATTGATGATAA

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: GLYMA08G44580.1 (Glycine max), 3'ss of exon 4
aactcttgcatcattgaattggtagtttcattggatatttttggaagagttccaaaagacgctcat--ttgccattgtatatgtaatgctaatcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAGTTTGCTCGTGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACA
 |    ||  | |   | ||   | | | ||    | ||     |    |||  |      ||  |  |||  ||   ||||| | | ||    || | ||||||||||| || ||||||||||| || || || ||||| || ||||| ||||||||||||||||| || ||||| || || || || || || || || |
tatatctgt-ttacgtatttttcaatattatattttgttcaaaaattgattcacattactccttgtggttggtatctcatatgaacttctctctaact-tagGTATTTGATTTATTTGACACAAAACACAATGGGATACTGGGTTTTGAAGAGTTTGCTCGTGCTCTCTCCGTTTTCCATCCTAATGCCCCCATTGATGATA

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G26570.2 (Arabidopsis thaliana), 3'ss of exon 5
aactcttgcatcattgaattggtagtttcattggatatttttggaaga-gttccaaaagacgctcatttgccattgtatatgtaatgctaatcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAGTTTGCTCGTGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACA
              ||   |  |  ||| ||   |    ||||  |    ||    ||||  ||  ||      |   |    | | | |||||     ||||||| || |||||||||||||||||||| |||||||| || |||||||||||||| |||||||| ||||| ||||| || || || |            
-----------gtatgttcttcttttttaatcaaaagactttgttatccatttgccaagatcctttttgaaagataacttgacagTACCAATCA----CAGGTATTCGATTTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTC------------

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT4G26570.1 (Arabidopsis thaliana), 3'ss of exon 5
aactcttgcatcattgaattggtagtttcattggatatttttgg-aagagttccaaaagacgctcatttgccattgtatatgtaatgctaatcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAGTTTGCTCGTGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACA
              ||   |  |  ||| ||   |    ||||  |    ||    ||||  ||  ||      |   |    | | | |||||     ||||||| || |||||||||||||||||||| |||||||| || |||||||||||||| |||||||| ||||| ||||| || || || || || || ||||
-----------gtatgttcttcttttttaatcaaaagactttgttatccatttgccaagatcctttttgaaagataacttgacagtaccaatca----cagGTATTCGATTTGTTTGACACAAAGCATAATGGAATACTGGGGTTTGAGGAGTTTGCGCGTGCTCTCTCTGTCTTTCATCCAAATGCTCCCATAGAAGACA

upper sequence: Vv19s0015g01070.t01 (Vitis vinifera), 3'ss of exon 3
lower sequence: AT5G55990.1 (Arabidopsis thaliana), 3'ss of exon 5
--aactcttgcatcattgaattggtagtttcattggatatttttggaagagttccaaaagacgctcatttgccattgtatatgtaatgctaatcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAGTTTGCTCGTGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACA
  ||   ||   || |   |||   ||| |  ||  |    |||     |    |||     |   |  |||      |||||| ||  |  |    | ||||| || || |||||||| |||||||| || |||||||| || |||||||| |||||||||||||| || || |||||||| || || ||||| || ||||
gtaatgtttctttcttcacattataagtgttcttaaacccatttttgtcaagatcaagtttagaagaaatgctg--aaatatgtgattttgtt----tctagGTTTTCGATTTGTTTGATACAAAGCACAATGGAATACTGGGGTTTGAGGAATTTGCTCGTGCTCTCTCCGTCTTTCACCCAAATGCGCCTATAGATGACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71871545|gb|DT020600.1|DT020600
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|71877258|gb|DT026313.1|DT026313
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|110718256|gb|EE094881.1|EE094881
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|351038627|gb|FQ464493.1|FQ464493
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|349823435|gb|FQ423246.1|FQ423246
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|77585271|gb|DV221728.1|DV221728
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|349817941|gb|FQ407930.1|FQ407930
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|352795595|gb|FQ480183.1|FQ480183
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|351025923|gb|FQ427935.1|FQ427935
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|110732177|gb|EE107234.1|EE107234
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|22009260|gb|BQ794294.1|BQ794294
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|110403605|gb|EC969239.1|EC969239
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|110422948|gb|EC989282.1|EC989282
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|33409905|gb|CF215532.1|CF215532
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGGCTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|351052899|gb|FQ453886.1|FQ453886
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|351054922|gb|FQ440261.1|FQ440261
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|349820559|gb|FQ404054.1|FQ404054
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|161720497|gb|FC070609.1|FC070609
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|349811205|gb|FQ406193.1|FQ406193
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|351016563|gb|FQ423990.1|FQ423990
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|87585010|gb|DY473945.1|DY473945
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|33410135|gb|CF215762.1|CF215762
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGGCTT-TCTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGA
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGT-TTGACACAAAGCATAACGGAATACTTGGCTTTGAGGA
EST: gi|71881490|gb|DT030545.1|DT030545
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|349826323|gb|FQ416128.1|FQ416128
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|22008915|gb|BQ793949.1|BQ793949
EST:     AAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|351056593|gb|FQ442421.1|FQ442421
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|22009728|gb|BQ794762.1|BQ794762
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|351043189|gb|FQ451362.1|FQ451362
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|27582659|gb|CB005354.1|CB005354
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|351054502|gb|FQ451978.1|FQ451978
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|77587524|gb|DV222927.1|DV222927
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
EST: gi|34549591|gb|CF517823.1|CF517823
EST:     AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGG                         GTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG
genomic: AATTGGCTTTGTTCAAAACAAACAAAAAGGAAAGCTTATTTGCTGATCGGgtactttttc ... tcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagttccaaaagacgctcatttgccattgtatatgtaatgctaatcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAGTTTGCTCGTGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACA
                                       tgctaat  putative branch site (score: 2)
                          attgtatatgtaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aactcttgcatcattgaattggtagtttcattggatatttttggaagagttccaaaagacgctcatttgccattgtatatgtaatgctaatcaattgtagGTATTTGACTTGTTTGACACAAAGCATAACGGAATACTTGGCTTTGAGGAGTTTGCTCGTGCTCTATCTGTTTTTCACCCCAACGCACCTATCGACGACA

- ctcttgc
- - - - - - - - - - - - - - - - - - - - - - - - - -ccaaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtaatgc