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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGATGAAGAGCTTCAATGTTACTTACTTCAACTGGTTCAGGCTCTTCGTTTCGAGCGCTCTGATAAATCTCGCCTTTGCCATTTCCTTGTGCAACGATgtatgcctactgcactctacgtgaataatttttcaagtggtataatttactctattctgcatccagtttgttggtatcatcttaatgcaccctttaaattttatag

Basic information

species Vitis vinifera
transcript Vv01s0127g00430.t01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA06G10090.1 (Glycine max), 5'ss of exon 9
GATGATGAAGAGCTTCAATGTTACTTACTTCAACTGGTTCAGGCTCTTCGTTTCGAGCGCTCTGATAAATCTCGCCTTTGCCATTTCCTTGTGCAACGATgtatgcctactgcactctacgtgaataatt-tttcaagtggtataatttactctattctgcatccagtttgttggtatcatcttaatgcaccctttaaattttatag
||||||||||||||||| ||||| || |||||| |||||||||||||||| || ||||| ||||  |||||||||||||  ||||||||| | ||  |  |||||     ||||    |  |||| |  | ||||| ||| |       | |||| | |  ||   | |  ||       ||| || | | |||  || ||| | ||
GATGATGAAGAGCTTCAGTGTTATTTGCTTCAATTGGTTCAGGCTCTTCGGTTTGAGCGTTCTGCCAAATCTCGCCTTTCTCATTTCCTTATCCAGTGTGgtatg-----tgcatgagagttgaagagctatttcaggtgctg------attctagt-tatatttggctcttt-------tctgaaagaaaccta-aattttgacag

upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: GLYMA04G10090.1 (Glycine max), 5'ss of exon 9
GATGATGAAGAGCTTCAATGTTACTTACTTCAACTGGTTCAGGCTCTTCGTTTCGAGCGCTCTGATAAATCTCGCCTTTGCCATTTCCTTGTGCAACGATgtatgcctactgcactctacgtgaataatttttcaagtggtataatttactctattctgcatccagtttgttggtatcatcttaatgcaccctttaaattttatag
||||||||||| ||||| ||||| || |||||| ||||||| |||||||| || ||||| ||||| |||||||||||||  ||||||||||| || ||  |||     |    | | || | |     | ||||| ||| | |   |   | ||||  || |    |||| ||  |  | | |||   |   |   |         
GATGATGAAGAACTTCAGTGTTATTTGCTTCAATTGGTTCAAGCTCTTCGGTTTGAGCGTTCTGACAAATCTCGCCTTTCTCATTTCCTTGTCCAGCGTGgtacatgcatgagagtttaagagc----tatttcaggtgctgtttctagttatatttggctt----tttgctgaaagtaacctaa---attttgacag--------

upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 9
lower sequence: AT1G60490.1 (Arabidopsis thaliana), 5'ss of exon 9
GATGATGAAGAGCTTCAATGTTACTTACTTCAACTGGTTCAGGCTCTTCGTTTCGAGCGCTCTGATAAATCTCGCCTTTGCCATTTCCTTGTGCAACGATgtatgcctactgca-ctctacgtgaa-taatttttcaagtggtataatttactctattctgcatccagtttgttggt--atcatcttaatgcaccctttaaattttatag
||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||||||| |||| ||||||  || |||||||| ||  |  |||||       || ||  || |||| | || ||     |  |||     |||   || || |     |   ||| |  |    | | |     | || ||||||| |||
GATGATGAAGAGCTTCAGTGTTACTTGCTTCAACTGGTTCAGGCTCTTCGTTTTGAACGCTCTGATAGATCTTGCCTTTCTCAATTCCTTGTCCAGAGGGgtatgtgctgaacatctagacatgaaatcatgttgagttttctatgtaaaactggtttatgtacttgttacattgcttgacttccgttacatttctttcaaattttttag