Sequence
atgc intronic sequence ATGC exonic sequence...aattttatcttctgagacacctatctacttcttgtggttaatatatatgtttctagatgctctcagagcacttaataaactcgtttcatttcgtatccagATTCTCTCTGAACATCGTAGTATTATAAGCTATCTGCAGAAGTTTCATCCGGATGAGCATGGGCCTTTTGGAATCACAGCCACCTGTCTTGAAACATTTA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA04G10090.1 (Glycine max), 3'ss of exon 13
-----aattttatcttctgagacacctatctacttcttgt-ggttaatatatatgtttctagatgctctcagagcacttaataaactcgtttcatttcgtatccagATTCTCTCTGAACATCGTAGTATTATAAGCTATCTGCAGAAGTTTCATCCGGATGAGCATGGGCCTTTTGGAATCACAGCCACCTGTCTTGAAACATTTA
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atgttggttgtattgtaggatacacaatcttgcaattggtagactaatatata-atcttttcaccaacaaaaaagactta-tata-taattt---ttcatgtctagATTTTGTCAGAGAATCGTAGCATCATAAGCTATTTGCAAAAGTTTCATCCTGATGACCATGGGCCTTTTGGAATTACAGCCACCTGCCTTGAAACATTTA
upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: GLYMA06G10090.1 (Glycine max), 3'ss of exon 13
-----aattttatcttctgagacacctatctacttcttgt-ggttaatatata-tgtttctagatgctctcagagcacttaataaactcgtttcatttcgtatccagATTCTCTCTGAACATCGTAGTATTATAAGCTATCTGCAGAAGTTTCATCCGGATGAGCATGGGCCTTTTGGAATCACAGCCACCTGTCTTGAAACATTTA
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atcttggttgtattgtaggatacacaatcttgcaattggtagactaatatataatattttcacaaaaa---aaaagacttacata--taattt--tttcatgtctagATTTTATCCGAGAATCGTAGCATCATAAGCTATTTGCAAAAGTTTCATCCTGATGACCATGGACCTTTTGGAATTACAGCCACCTGCCTTGAAACATTTA
upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 13
lower sequence: AT1G60490.1 (Arabidopsis thaliana), 3'ss of exon 13
----aattttatcttctgagacacctatctacttcttgtggttaatatatatgtttctagatgctctcagagcacttaata------------aactcgtttcatttcgtatccagATTCTCTCTGAACATCGTAGTATTATAAGCTATCTGCAGAAGTTTCATCCGGATGAGCATGGGCCTTTTGGAATCACAGCCACCTGTCTTGAAACATTTA
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gtacagtatcagtgcttaaacccattgcccccatgcctaagtaattttgaccctctcttataattttgagagtagctaatctcgttatcctgtgatatgtgcctttgcatgtttagATTCTCTCAGAGCACCGAAGCATAACAAGTTATCTGCAGAAGTTTCATCCTGATGAGCATGCACCTTTCGGGATAACAGCCACTTGTCTTGATACATTTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27584745|gb|CB007440.1|CB007440EST: GACAGGATGAAGGCATGCTGGAATTCATACCATCCAGCTCTTTGGCGCAG ATTCTCTCTGAACATCGTAGTATTATAAGCTATCTGCAGAAGTTTCATCCG
genomic: GACAGGATGAAGGCATGCTGGAATTCATACCATCCAGCTCTTTGGCGCAGgtagatatcc ... tcgtatccagATTCTCTCTGAACATCGTAGTATTATAAGCTATCTGCAGAAGTTTCATCCG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatgtttctagatgctctcagagcacttaataaactcgtttcatttcgtatccagATTCTCTCTGAACATCGTAGTATTATAAGCTATCTGCAGAAGTTTCATCCGGATGAGCATGGGCCTTTTGGAATCACAGCCACCTGTCTTGAAACATTTA
acttaat putative branch site (score: 4)
tttcatttc putative PPT
acttaataaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aattttatcttctgagacacctatctacttcttgtggttaatatatatgtttctagatgctctcagagcacttaataaactcgtttcatttcgtatccagATTCTCTCTGAACATCGTAGTATTATAAGCTATCTGCAGAAGTTTCATCCGGATGAGCATGGGCCTTTTGGAATCACAGCCACCTGTCTTGAAACATTTA
- - - - cttctga
- - - - - - - - acaccta
- - - - - - - - - - - - ctacttc
- - - - - - - - - - - - - - - -ttgtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctctc