Sequence
atgc intronic sequence ATGC exonic sequenceAGCATGGGCCTTTTGGAATCACAGCCACCTGTCTTGAAACATTTATAAAAAGCTGTGCTGGCTACTCAGTTATTACATATATTCTGGGCATTGGAGACAGgtgactattgaatttgacaatgtacatcaagactatctacatattactgtaccttatttaaattagctagtgttttttaattttctgttgattcctggggtagatctgaatatgtcaaactgaagtatatttctgaatacaaaatcttcttggcttgtag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os08g21590.2 (Oryza sativa), 5'ss of exon 14
AGCATGGGCCTTTTGGAATCACAGCCACCTGTCTTGAAACATTTATAAAAAGCTGTGCTGGCTACTCAGTTATTACATATATTCTGGGCATTGGAGACAGgtgactattgaatttgacaatgtacatcaagactatctacatattactgtaccttatttaaattagctagtgttttttaattttctgttgattcctggggtagatctgaatatgtcaaactgaagtatatttctgaatacaaaatcttcttggcttgtag
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AAGATGGCCCTTTTGGTATAACTGCCCAATGTTTGGAAACTTTTATAAAAAGTTGTGCTGGCTACAGTGTCATTACATACATACTGGGGATTGGAGACAGgttagcatttttgctaccta-gtatagttaagttgcatacatctaggtgttttaagcttgtgct--ctaagcatatcacacaatgcggcatctttttagttgc---------------------------------------------------------
upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: LOC_Os05g08810.1 (Oryza sativa), 5'ss of exon 14
AGCATGGGCCTTTTGGAATCACAGCCACCTGTCTTGAAACATTTATAAAAAGCTGTGCTGGCTACTCAGTTATTACATATATTCTGGGCATTGGAGACAGgtg-actattgaatttgacaatgtacatcaagactatctacatattactgtaccttatttaaattagctagtgttttttaattttctgttgattcctggggtagatctgaatatgtcaaactgaagtatatttctgaatacaaaatcttcttggcttgtag
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AAGATGGTCCTTTTGGTATAACTGCTCAGTGCTTGGAAACTTTCATAAAAAGCTGTGCTGGTTACTCTGTCATTACATATATAATGGGGGTTGGAGACAGgttcgcatttttatttctcaaaat---ctcagacccttggtgcctt--tggttctgactatcacttatgagtacttataggcta---gttaa--ccttattaaaacttca---------------------------------------------------
upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA04G10090.1 (Glycine max), 5'ss of exon 14
AGCATGGGCCTTTTGGAATCACAGCCACCTGTCTTGAAACATTTATAAAAAGCTGTGCTGGCTACTCAGTTATTACATATATTCTGGGCATTGGAGACAGgtgactattgaatttgacaatgtacatcaagactatctacatattactgtaccttatttaaattagctagtgttttttaattttctgttgattcctggggtagatctgaatatgtcaaactgaagtatatttctgaatacaaaatcttcttggcttgtag
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ACCATGGGCCTTTTGGAATTACAGCCACCTGCCTTGAAACATTTATAAAAAGCTGTGCTGGATACTCTGTTATAACATATATACTTGGTATCGGAGACAGgtgattgttgattttattcat-tacat-gtcattttatatctaataaataactgagactgggttcaccagaaactgcta----catgctggcc-----agaaaatacaggt-------------------------------------------------
upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: GLYMA06G10090.1 (Glycine max), 5'ss of exon 14
AGCATGGGCCTTTTGGAATCACAGCCACCTGTCTTGAAACATTTATAAAAAGCTGTGCTGGCTACTCAGTTATTACATATATTCTGGGCATTGGAGACAGgtgactattgaatttgacaatgtacatcaagactatctacatattactgtaccttatttaaattagctagtgttttttaattttctgttgattcctggggtagatctgaatatgtcaaactgaagtatatttctgaatacaaaatcttcttggcttgtag
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ACCATGGACCTTTTGGAATTACAGCCACCTGCCTTGAAACATTTATAAAAAGCTGTGCTGGCTACTCTGTTATAACATATATACTTGGTATCGGAGACAGgtgattgttgatttt----atttgtaacatgtcattttatatctaa---taaacaatagagactgg---gttcaccagaaactgccacatgctggccagaaaacacagag--------------------------------------------------
upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 14
lower sequence: AT1G60490.1 (Arabidopsis thaliana), 5'ss of exon 14
AGCATGGGCCTTTTGGAATCACAGCCACCTGTCTTGAAACATTTATAAAAAGCTGTGCTGGCTACTCAGTTATTACATATATTCTGGGCATTGGAGACAGgtgactattgaatttgacaatgtacatcaagactatctacatattactgtaccttatttaaattagctagtgttttttaattttctgttgattcctggggtagatctgaatatgtcaaactgaagtatatttctgaatacaaaatcttcttggcttgtag
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AGCATGCACCTTTCGGGATAACAGCCACTTGTCTTGATACATTTATAAAAAGTTGTGCGGGCTATTCTGTGATCACATATATACTTGGCATTGGAGACAGgta--tggtgcaaaacatgatct-cgttaaggtttttgagaatttttttcaatttgctgtaaattgtgatgatggcctgatttt-----gatatgtag--------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27584745|gb|CB007440.1|CB007440EST: AGCTGTGCTGGCTACTCAGTTATTACATATATTCTGGGCATTGGAGACAG GCACCTAGACAACCTTCTCCTTAGGGATGATGGGCGTCTGTTCCATGTTGA
genomic: AGCTGTGCTGGCTACTCAGTTATTACATATATTCTGGGCATTGGAGACAGgtgactattg ... tggcttgtagGCACCTAGACAACCTTCTCCTTAGGGATGATGGGCGTCTGTTCCATGTTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCATGGGCCTTTTGGAATCACAGCCACCTGTCTTGAAACATTTATAAAAAGCTGTGCTGGCTACTCAGTTATTACATATATTCTGGGCATTGGAGACAGgtgactattgaatttgacaatgtacatcaagactatctacatattactgtaccttatttaaattagctagtgttttttaattttctgttgattcctggggtagatctgaatatgtcaaactgaagtatatttctgaatacaaaatcttcttggcttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA