Sequence
atgc intronic sequence ATGC exonic sequence...catgcatgattatgtgtaaattaagggtttcatgggtaggtggtatatttgattgattactgtttccggcagttcgatactaacatccactttgtaacagTTGGGAGCTGGTGCAAATGGAGATGAAGACGGACTTAAGTTATGGCAGAGTTTGGTGCGTCAGACAGAACTGACAGCTCAGTTGTGTTTAATAATGAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA04G10090.1 (Glycine max), 3'ss of exon 10
---catgc-atgattatgtgtaaattaagggtttcatggg-taggtggtatatttgattgattactgtttccggcagttcgatactaacatccactttgtaacagTTGGGAGCTGGTGCAAATGGAGATGAAGACGGACTTAAGTTATGGCAGAGTTTGGTGCGTCAGACAGAACTGACAGCTCAGTTGTGTTTAATAATGAGAG
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caacatattaagttcattaataaatttaatgtgatagaaactagaaagctagttggattaattact---tccgg-aacttgacaattatgccc-cattgtctcagATAGCAGCTGGTGTTAATGGAGAGGAAGATGGGTTTAAACAGTGGCAGAGTTTGGTACGCCAGACAGAATTGACTGCTCAGTTGTGTTCAATCACTAGAG
upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: GLYMA06G10090.1 (Glycine max), 3'ss of exon 10
---catgcatgattatgtgtaaattaagggtttcatgggtaggtggtatatttgattgattactgtttccggcagttcgatactaacatccactttgtaacagTTGGGAGCTGGTGCAAATGGAGATGAAGACGGACTTAAGTTATGGCAGAGTTTGGTGCGTCAGACAGAACTGACAGCTCAGTTGTGTTTAATAATGAGAG
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taactgaaaaaagtat-tccaacatattaagttcattaataaatttaacgtgatagaaactagagagctagttggattaattc-attctggaattcatt-cagATGGCAGCTGGTGTTAATGGAGAGGAAGATGGGTTTAAACAGTGGCAGAGCTTGGTACGCCAGACAGAATTGACTGCTCAGTTGTGTTCAATCACTAGAG
upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 10
lower sequence: AT1G60490.1 (Arabidopsis thaliana), 3'ss of exon 10
catgcatga-ttatgtgtaaattaagggtttcatgggtaggtggtatat-ttgattgattactgtttccggcagttcgatactaacatccactttg-taacagTTGGGAGCTGGTGCAAATGGAGATGAAGACGGACTTAAGTTATGGCAGAGTTTGGTGCGTCAGACAGAACTGACAGCTCAGTTGTGTTTAATAATGAGAG---
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-gtccaagaatgataagcaaactgctgaaggaattgagctgctttctacgtcaagtgagatctgttt--agctgatctagactgatatttgctttgatggcagCTGCCGCCTGGTGTTAACGG---CGAAGATGGATATCAATTGTGGCAAAGTTTGGTGCGCCAAACAGAACTGACTGCTCAGTTATGTTCCATTACACGAGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatttgattgattactgtttccggcagttcgatactaacatccactttgtaacagTTGGGAGCTGGTGCAAATGGAGATGAAGACGGACTTAAGTTATGGCAGAGTTTGGTGCGTCAGACAGAACTGACAGCTCAGTTGTGTTTAATAATGAGAG
tactaac putative branch site (score: 0)
tccacttt CT-rich tract
attgatta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
catgcatgattatgtgtaaattaagggtttcatgggtaggtggtatatttgattgattactgtttccggcagttcgatactaacatccactttgtaacagTTGGGAGCTGGTGCAAATGGAGATGAAGACGGACTTAAGTTATGGCAGAGTTTGGTGCGTCAGACAGAACTGACAGCTCAGTTGTGTTTAATAATGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
catgcat
- - - - - - - - -aaattaa
- - - - - - - - - - - - - - - - -gggtagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acatcca