Sequence
atgc intronic sequence ATGC exonic sequencegtttctggttattattgtatcagtgtttatggatctgatatttcaaggattatgcccttgtattattttgaaatggttggatttctctcatctgctcattactgactaacttcctatagGTCCCTAGGCATGAGCGTGGAGAATTGGAGCGTCTAGAAAAGCTTATGAACAAGTATGAAAGGGGACAGATTCAGCGTGTTGATTGGCTGGATCGCCTCA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA04G10090.1 (Glycine max), 3'ss of exon 4
gtttctggttattattgtatcagtgtttatggatctgatatttcaaggattatgcccttgtattattttgaaatggttggatttctctcatctgctcattactgactaacttcctatagGTCCCTAGGCATGAGCGTGGAGAATTGGAGCGTCTAGAAAAGCTTATGAACAAGTATGAAAGGGGACAGATTCAGCGTGTTGATTGGCTGGATCGCCTCA
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----------------------gtaattaaaattttaagtgaacttaggttccattttttgttcaattttatgaattttttcagtcctaataagcatactttgaattgtcctcat-tagGTCCCTAGGCATGAACGTGGGGAATTGGAGCGATTAGAAAAGCTTGTGAATAAGTATGAACGAGGTCAAATTCAACGGGTGGACTGGCTGGATCGCCTGA
upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: GLYMA06G10090.1 (Glycine max), 3'ss of exon 4
gtttctggttattattgtatcagtgtttatggatctgatatttcaaggattatgcccttgtattattttgaaatggttggatttctctcatctgctcattactgactaacttcctatagGTCCCTAGGCATGAGCGTGGAGAATTGGAGCGTCTAGAAAAGCTTATGAACAAGTATGAAAGGGGACAGATTCAGCGTGTTGATTGGCTGGATCGCCTCA
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----gtaatgaaaatttta--agtgaacttaggtgccatttttca-----tttttttttttaattttatgaaatctttcagtc---ctaataagcatactttgaattgtcctcat-tagGTCCCTAGGCATGAACGTGGGGAATTGGAACGATTAGAAAAGCTTGTGAATAAGTATGAACGAGGTCAAATTCAACGGGTGGACTGGCTGGATCGCCTCA
upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 4
lower sequence: AT1G60490.1 (Arabidopsis thaliana), 3'ss of exon 4
gtttctggttattattgtatcagtgtttatggatctgatatttcaaggattatgcccttgtattattttgaaatggttggatttctctcatctgctcattactgactaacttcctatagGTCCCTAGGCATGAGCGTGGAGAATTGGAGCGTCTAGAAAAGCTTATGAACAAGTATGAAAGGGGACAGATTCAGCGTGTTGATTGGCTGGATCGCCTCA
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gtttctgatacatctcaactcttcctatata-atccgaaatatcgttcttgatgccgacctactttttc-------ttgggtt------atctgtt-atttttctgta----ctcgtagGTTCCACGGCATGAGCGTGGAGAGCTAGAGCGTTTAGAGAAGCTCATGAATAAGTATGAGAGGGGGCAGATTCAAAGCATAGATTGGCTGGATCGACTTA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttgaaatggttggatttctctcatctgctcattactgactaacttcctatagGTCCCTAGGCATGAGCGTGGAGAATTGGAGCGTCTAGAAAAGCTTATGAACAAGTATGAAAGGGGACAGATTCAGCGTGTTGATTGGCTGGATCGCCTCA
gactaac putative branch site (score: 1)
cttcctat CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtttctggttattattgtatcagtgtttatggatctgatatttcaaggattatgcccttgtattattttgaaatggttggatttctctcatctgctcattactgactaacttcctatagGTCCCTAGGCATGAGCGTGGAGAATTGGAGCGTCTAGAAAAGCTTATGAACAAGTATGAAAGGGGACAGATTCAGCGTGTTGATTGGCTGGATCGCCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA