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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaccttcttctatcgtacgttctctgtccacaagtataaaattgttttctgtttcttgttatgactttggctgctttgcttgtagCTTCAAGAGAAGTTTAAGTTGGACTTGGACGATGAAGCCTGCATTCACTTTTTCCAGGATCTTATCAATGAGAGTGTGAGTGCATTGTTTCCTCAAATGG

Basic information

species Vitis vinifera
transcript Vv01s0127g00430.t01
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GRMZM2G103721_T01 (Zea mays), 3'ss of exon 16
--------gtgaccttctt---ctatcgtacgttctctgtccacaag---tataaaattgttttctgtttcttgttatgactttg---gctgctttgcttgt-agCTTCAAGAGAAGTTTAAGTTGGACTTGGACGATGAAGCCTGCATTCACTTTTTCCAGGATCTTATCAATGAGAGTGTGAGTGCATTGTTTCCTCAAATGG
        || |  ||  |   ||   |  | |      ||||||||    ||  ||    |     |  | || | |   ||||   | ||| | |    | |||| || ||||| ||   ||||||  ||||||| || |     || || || ||||||||||||||||| || || ||||||||  |||| ||||||||||
gtaaattggttatatttatgagctcaggagcatgtgggctccacaaggagcattcaaaaactcaaaatgacatgctctttgtttgtgtggtgcatcgtcgatcagCTCCAGGAGAAATTCCGGTTGGATCTGGACGACGAGGAGGCTATACATTTCTTCCAGGATCTTATCAACGATAGCGTGAGTGCTCTGTTCCCTCAAATGG

upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA04G10090.1 (Glycine max), 3'ss of exon 16
gtgaccttcttctatcgtacgttctctgtccacaagtataaaattgttttctgtttcttgttatgactttggctgctttgct-tgtagCTTCAAGAGAAGTTTAAGTTGGACTTGGACGATGAAGCCTGCATTCACTTTTTCCAGGATCTTATCAATGAGAGTGTGAGTGCATTGTTTCCTCAAATGG
            ||   | | || | | || | || ||    |    | |   ||| || |||| ||   | |   || ||| || ||||||| || ||||||  |||||||||||| ||||||||| | || || || ||||||||||||||||||||||||||||||||||| || ||||| ||||
-----------gtaagctcccttgtgtttcaataaataggtgaaaaatgttcatttgttcttat-accaggacattttcgctgtgcagCTTCAGGAAAAGTTTCGGTTGGACTTGGATGATGAAGCCAGTATACATTTCTTCCAGGATCTTATCAATGAGAGTGTGAGTGCATTATTCCCTCAGATGG

upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 16
lower sequence: GLYMA06G10090.1 (Glycine max), 3'ss of exon 16
gtgaccttcttctatcgtacgttctctgtccacaagtataaaattgttttctgtttcttgttatgactttggctgctttgct-tgtagCTTCAAGAGAAGTTTAAGTTGGACTTGGACGATGAAGCCTGCATTCACTTTTTCCAGGATCTTATCAATGAGAGTGTGAGTGCATTGTTTCCTCAAATGG
            ||   | | || | | || | || ||    |    | |   ||| || |||| ||   |||    | ||| || ||||||| || ||||||  |||||||||||| ||||||||| | || || || ||||||||||||||||||||||||||||||||||| || ||||| ||||
-----------gtaagctcccttgtgtttcaataaataggtgaaaactgttcatttgttcttat-accaaggcattgtggctgtgcagCTTCAGGAAAAGTTTCGGTTGGACTTGGATGATGAAGCCAGTATACATTTCTTCCAGGATCTTATCAATGAGAGTGTGAGTGCATTATTCCCTCAGATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caagtataaaattgttttctgtttcttgttatgactttggctgctttgcttgtagCTTCAAGAGAAGTTTAAGTTGGACTTGGACGATGAAGCCTGCATTCACTTTTTCCAGGATCTTATCAATGAGAGTGTGAGTGCATTGTTTCCTCAAATGG
                                           ctttgctt  CT-rich tract
     ataaaattgttttct  TA-rich tract