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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCGCAAATCTAGTAACCTCATTTTGAATCTGTTCCATCTGATGGCGGGTTCCAATATTCCTGACATAGCTTCTGATCCTGAGAAAGGCATTCTTAAGgtgaccttcttctatcgtacgttctctgtccacaagtataaaattgttttctgtttcttgttatgactttggctgctttgcttgtag

Basic information

species Vitis vinifera
transcript Vv01s0127g00430.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA04G10090.1 (Glycine max), 5'ss of exon 16
CCTCCGCAAATCTAGTAACCTCATTTTGAATCTGTTCCATCTGATGGCGGGTTCCAATATTCCTGACATAGCTTCTGATCCTGAGAAAGGCATTCTTAAGgtgaccttcttctatcgtacgttctctgtccacaagtataaaattgttttctgtttct-tgttatgactttggctgctttgcttgtag
 || |||||||| |||||||| ||||||||||| ||  | || ||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||| | || | |      |  ||| ||  |  | | ||  |||||  |  | ||||  | |   | ||| ||  | ||| |||      
TCTTCGCAAATCCAGTAACCTAATTTTGAATCTATTTTACCTAATGGCGGGTTCCAATATTCCTGATATAGCTTCTGATCCTGAAAAGGGGATTCTTAAGgtaagctccct------tgtgtt-tcaataaataggtgaaaaatgttcatttgttcttataccaggacattttc-gctgtgcag----

upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA06G10090.1 (Glycine max), 5'ss of exon 16
CCTCCGCAAATCTAGTAACCTCATTTTGAATCTGTTCCATCTGATGGCGGGTTCCAATATTCCTGACATAGCTTCTGATCCTGAGAAAGGCATTCTTAAGgtgaccttcttctatcgtacgttctctgtccacaagtataaaattgttttctgtttcttgttatgactttggctgctttgct-tgtag
 || |||||||| |||||||| ||||| ||||| ||  |  | ||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||| | || | |      |  ||| ||  |  | | ||  |||| ||||   |  ||||| |    ||   |||    | ||| || ||
TCTTCGCAAATCCAGTAACCTAATTTTAAATCTATTTTACTTAATGGCGGGTTCCAATATTCCTGATATAGCTTCTGATCCTGAAAAGGGGATTCTTAAGgtaagctccct------tgtgtt-tcaataaataggtg-aaaactgttcatttgttcttat----accaaggcattgtggctgtgcag

upper sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: AT1G60490.1 (Arabidopsis thaliana), 5'ss of exon 16
CCTCCGCAAATCTAGTAACCTCATTTTGAATCTGTTCCATCTGATGGCGGGTTCCAATATTCCTGACATAGCTTCTGATCCTGAGAAAGGCATTCTTAAGgtgaccttcttctatcgtacgttctctgtccacaagtataaaattgtt-ttctgtttcttgttatgactttggctgctttgcttgtag---------------------------
 ||||| ||||| || ||||| |||||||||||||| ||||| ||||||||||| | |||||| || |||||||| || || || || |||||||| || || |  |||||  |   |       ||  ||| | | |    |   || ||||  |    |   || |||| |||   |   |  ||                            
TCTCCGGAAATCGAGCAACCTTATTTTGAATCTGTTTCATCTCATGGCGGGTTCAACTATTCCCGATATAGCTTCAGACCCAGAAAAGGGCATTCTCAAAgtaagtttctttcacttt----cacctaaccaaatgaaacccaccattcttctcctaaccggattggcttttgcttgctccttattattctcgtaaatggtgtctttttattcag