Sequence
atgc intronic sequence ATGC exonic sequence...tcgtgtagttttttagttgtgttatcggattgtgtcaaaattgccacagccacttctaatatacatatagaaagcttgtaactttaatattctctttcagGATTCAGATGCTTCAATTCGGAAAAGGGCCCTTGAACTTATTTATGTTCTAGTGAATGACAGCAATGTGAAGCCTTTGGCAAAAGAGCTAATTGATTATC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g00310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: LOC_Os02g56110.2 (Oryza sativa), 3'ss of exon 7
tcgtgtagttt--tttagttgtgttatcggattgtgtcaaaattgccacagcc-acttctaatatacatatagaaagcttgtaactttaatattc--tctttcagGATTCAGATGCTTCAATTCGGAAAAGGGCCCTTGAACTTATTTATGTTCTAGTGAATGACAGCAATGTGAAGCCTTTGGCAAAAGAGCTAATTGATTATC
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----gaagcttaagtcagcttggtcatct-attgtttttgccttcctagaatctaatcatgttattttggcttttaacattttaaattacttgtggacctttcagGATGCAGATGCTTCTATTCGCAAGAGGGCCCTTGAACTTGTTTTTTTGTTAGTCAACGATACAAATGTAAAGCCTTTGACTAAAGAGCTTGTCGACTACT
upper sequence: Vv01s0026g00310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA02G03800.1 (Glycine max), 3'ss of exon 6
tcgtgtagttttttagttgtgttatcggatt--gtgtcaaaattgccacagccacttctaatatacatatagaaagcttgtaactttaatattctctttcagGATTCAGATGCTTCAATTCGGAAAAGGGCCCTTGAACTTATTTATGTTCTAGTGAATGACAGCAATGTGAAGCCTTTGGCAAAAGAGCTAATTGATTATC
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-------gtatttgatttgtcttccctcattcagtgacaaagatg--------agctctgttttacaatccaaggggttgatcatttgactcttaacttcagGATTCAGATGCTTCGATTCGGAAAAGAGCCCTTGAACTTGTTTATGTTTTGGTGAATGAGACTAATGTGAAGCCCTTGGCAAAAGAGCTTATAGATTATC
upper sequence: Vv01s0026g00310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA01G03890.1 (Glycine max), 3'ss of exon 7
tcgtgtagttttttagttgtgttatcggatt--gtgtcaaaattgccacagccacttctaatatacatatagaaagcttgtaactttaatattctctttcagGATTCAGATGCTTCAATTCGGAAAAGGGCCCTTGAACTTATTTATGTTCTAGTGAATGACAGCAATGTGAAGCCTTTGGCAAAAGAGCTAATTGATTATC
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-------gtatttgatttgtcttccctcattcagtgacaaagatg----agctttgttttaca---atccaaggagttgatcatttgactcttaactt-cagGATTCAGATGCTTCGATTCAGAAAAGAGCCCTTGAACTTGTTTATGTTTTGGTGAATGAAACTAATGTGAAGCCCTTGGCAAAAGAGCTTATAGATTATC
upper sequence: Vv01s0026g00310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: GLYMA08G39930.1 (Glycine max), 3'ss of exon 7
tcgtgtagttttttagttgtgttatcggat-tgtgtcaaaattgccacagccacttctaatataca-tatagaaagcttgtaactttaatattctctttcagGATTCAGATGCTTCAATTCGGAAAAGGGCCCTTGAACTTATTTATGTTCTAGTGAATGACAGCAATGTGAAGCCTTTGGCAAAAGAGCTAATTGATTATC
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----gtattaattgagcagtctttcttcctatttcttataatggagagactcagctttgttttacaatgtgaaaagttagtgactt-aactttttggtttagGATTCTGATGCTTCAATTCGGAAAAGAGCTCTTGAACTTGTTTGTATTCTGGTGAATGAAACTAATGTGAAGGCCTTAACAAAAGAGCTAGTAGAATATC
upper sequence: Vv01s0026g00310.t01 (Vitis vinifera), 3'ss of exon 7
lower sequence: AT1G60070.2 (Arabidopsis thaliana), 3'ss of exon 7
-------tcgtgtagttttttagttgtgttatcggattgtgtcaaaattgccacagccacttctaatatacatatagaaagcttgtaactttaatattctctttcagGATTCAGATGCTTCAATTCGGAAAAGGGCCCTTGAACTTATTTATGTTCTAGTGAATGACAGCAATGTGAAGCCTTTGGCAAAAGAGCTAATTGATTATC
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tccgactttgtgtcttagtatagtaa-accatctaattctgtgtaggtcgactgagatcattctt-tat-taaatggaaagtgtttaat----atcttgtgctttagGATTCAGATGCTTCAATTCAGAAAAGGGCACTTGAGCTTATTTACCTTCTAGTGAATGAGAATAACGTGAAGCCACTAGCAAAGGAGCTTATAGAATATTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71889458|gb|DT038513.1|DT038513EST: ATGCGCAAGCAGTGCAGAGGCATCGCGCAACAATTTTGGAATGTGTAAAG GATTCAGATGCTTCAATTCGGAAAAGGGCCCTTGAACTTATTTATGTTCTA
genomic: ATGCGCAAGCAGTGCAGAGGCATCGGGCAACAATTTTGGAATGTGTAAAGgtattgtatg ... tctctttcagGATTCAGATGCTTCAATTCGGAAAAGGGCCCTTGAACTTATTTATGTTCTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acagccacttctaatatacatatagaaagcttgtaactttaatattctctttcagGATTCAGATGCTTCAATTCGGAAAAGGGCCCTTGAACTTATTTATGTTCTAGTGAATGACAGCAATGTGAAGCCTTTGGCAAAAGAGCTAATTGATTATC
tattctctttc CT-rich tract
taatatacatatagaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcgtgtagttttttagttgtgttatcggattgtgtcaaaattgccacagccacttctaatatacatatagaaagcttgtaactttaatattctctttcagGATTCAGATGCTTCAATTCGGAAAAGGGCCCTTGAACTTATTTATGTTCTAGTGAATGACAGCAATGTGAAGCCTTTGGCAAAAGAGCTAATTGATTATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - tcaaaat
- - - - - - - - - - - - - - - - - - - - -tgccaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atagaaa