Sequence
atgc intronic sequence ATGC exonic sequence...gatcagtcaggagtcatttctgctctgcaaaaactcatctctttaagaactttttttgctcgttagatacttcattgttacaaaatcctgtcactttcagAAACCTCTTGTCATGCGCATAAGGATAGCTTACAAGATGAACAACAAGGATGTCTTGGAGGAAGGACAAATCAACAATTTCCCTCGTGACTTATGAGGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g00310.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA02G03800.1 (Glycine max), 3'ss of exon 16
----gatcagtcaggagtcatttctgctctgcaaaaactcatctctttaagaactttttttgctcgttagatacttcattgttacaaaatcctgtcactttcagAAACCTCTTGTCATGCGCATAAGGATAGCTTACAAGATGAACAACAAGGATGTCTTGGAGGAAGGACAAATCAACAATTTCCCTCGTGACTTATGAGGTG
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ggtgtacactttctgagataattttcctgtatgta----catttgaatgtaatgtataagtgcttcttagagaagacttgatcgctagcaactatttttttcagAAATCTCTTGTCATGCGTATAAGGATAGCATACAAGATAAATGGCAAGGATACACTGGAGGAAGGACAAGTCAATAACTTTCCTCATGGTTTATGAAGCC
upper sequence: Vv01s0026g00310.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA08G39930.1 (Glycine max), 3'ss of exon 17
gatcagtcaggagtcatttctgctctgcaaaaactcatctctttaagaactttttttgctcgttagatacttcattgttacaaaatcctgtcactttcagAAACCTCTTGTCATGCGCATAAGGATAGCTTACAAGATGAACAACAAGGATGTCTTGGAGGAAGGACAAATCAACAATTTCCCTCGTGACTTATGAGGTG
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------gtagattttccttccgtgctacgtaaattttgtgctcta------tcatgtaccttatgattttatgacggctagcaattattcta--tttcagAAATCTCTTGTCATGCGCATAAAGATAGCATACAAGATAAATGGCAAAGAGACACAAGAAGAAGGACAAATCAATAATTTTCCTCGTGATTTATGAGGCC
upper sequence: Vv01s0026g00310.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: GLYMA01G03890.1 (Glycine max), 3'ss of exon 17
---gatcagtcaggagtcatttctgctctgcaaaaactcatctctttaagaactttttttgctcgttagatacttcattgttacaaaatcctgtcactttcagAAACCTCTTGTCATGCGCATAAGGATAGCTTACAAGATGAACAACAAGGATGTCTTGGAGGAAGGACAAATCAACAATTTCCCTCGTGACTTATGAGGTG
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gtgtacactttctgagatgattttcctgtatgtacatttaaatgtaaatgtataagtgcttcttagagaagacttgattgctagcaa---ctatttttttcagAAATCTCTTGTCATGCGTATAAGGATTGCATACAAGATAAATGGCAAGGATACACTGGAGGAAGGACAAGTTAATAATTTTCCTCGTGGTTTATGAAGCC
upper sequence: Vv01s0026g00310.t01 (Vitis vinifera), 3'ss of exon 17
lower sequence: AT1G60070.2 (Arabidopsis thaliana), 3'ss of exon 18
--------------------------gatcagtcaggagt-catttctgctc-tgcaaaaactcatctctttaagaactttttttgctcgttagatacttcattgttacaaaatcctgtcactttcagAAACCTCTTGTCATGCGCATAAGGATAGCTTACAAGATGAACAACAAGGATGTCTTGGAGGAAGGACAAATCAACAATTTCCCTCGTGACTTATGAGGTG
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gtacattttcttctttttctttcttctcttcaccagatttatataacaacaagcacaaaacctcaatcttttgtgaaaccgatac-cacaaagcgctcagaataatcgctgttcttctctgttttcagAAACCCATTGTGATGCGGATGAGGGTAGGTTACAAGATTAATGGCAAAGATGTGTTGGAGGAAGGACAAATCAACAATTTCCCACGTGGGTTATGAGAACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30126008|gb|CB911347.1|CB911347EST: ATGGGTCTATCACACAAAATTTGCGAGTTACTAACACCCTACATGGGAAG AAACCTCTTGTCATGCGCATAAGGATAGCTTACAAGATGAACAACAAGGAT
genomic: ATGGGTCTATCACACAAAATTTGCGAGTTACTAACAGCCTACATGGGAAGgtacatgagt ... tcactttcagAAACCTCTTGTCATGCGCATAAGGATAGCTTACAAGATGAACAACAAGGAT
EST:
gi|156723711|gb|EV228503.1|EV228503EST: ATGGGTCTATCACACAAAATTTGCGAGTTACTAACAGCCTACATGGGAAG AAACCTCTTGTCATGCGCATAAGGATAGCTTACAAGATGAAACAACA-GGA
genomic: ATGGGTCTATCACACAAAATTTGCGAGTTACTAACAGCCTACATGGGAAGgtacatgagt ... tcactttcagAAACCTCTTGTCATGCGCATAAGGATAGCTTACAAGATGAA-CAACAAGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agaactttttttgctcgttagatacttcattgttacaaaatcctgtcactttcagAAACCTCTTGTCATGCGCATAAGGATAGCTTACAAGATGAACAACAAGGATGTCTTGGAGGAAGGACAAATCAACAATTTCCCTCGTGACTTATGAGGTG
tcactttc CT-rich tract
ttacaaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatcagtcaggagtcatttctgctctgcaaaaactcatctctttaagaactttttttgctcgttagatacttcattgttacaaaatcctgtcactttcagAAACCTCTTGTCATGCGCATAAGGATAGCTTACAAGATGAACAACAAGGATGTCTTGGAGGAAGGACAAATCAACAATTTCCCTCGTGACTTATGAGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - -ttctgct
- - - - - - - - - - - - - gcaaaaa
- - - - - - - - - - - - - - - - - tcatctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaatcc