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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACACCTGCAAATCCGCAAACAACATTGGTCCAGGCCAGTTTTACAAATTTGTCACCTAATATCTTTACAGATTTTATTTTCCAGGCAGCAGTCCCAAAGgtaacactagatgactgtcaatctgttgaactctctgtttcttcttcactgtattacttatatttctgttaatatgtcaatttgtaatttgacccatcta...

Basic information

species Vitis vinifera
transcript Vv01s0026g00310.t01
intron # 16
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GRMZM2G054210_T01 (Zea mays), 5'ss of exon 18
GACACCTGCAAATCCGCAAACAACATTGGTCCAGGCCAGTTTTACAAATTTGTCACCTAATATCTTTACAGATTTTATTTTCCAGGCAGCAGTCCCAAAGgtaacactagatgactgtcaatctgttgaactctctgtttcttcttcactgtattacttatatttctgttaatatgtcaatttgta---atttgacccatcta----
||  | || ||| || | |   ||     | || |||| |||||| |||||| || ||| ||  ||||||||||||||||| ||||| || || |||||||||| |    || | |||  || |  | |    ||||||| |        |    || |  || | |     | | | | | || |   ||  | |   | |     
GAAGCTTGGAAACCCACGAGAGACTACAATTCATGCCACTTTTACCAATTTGACATCTAGTACTTTTACAGATTTTATTTTTCAGGCTGCTGTTCCAAAGgtaaaatcttattattgt--atgttataa----tctgtttttgagctggcgctacaccttgatgtttcacggttt-ttattctgcacacatagggcatgtttggaag

upper sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 16
lower sequence: GLYMA01G03890.1 (Glycine max), 5'ss of exon 16
GACACCTGCAAATCCGCAAACAACATTGGTCCAGGCCAGTTTTACAAATTTGTCACCTAATATCTTTACAGATTTTATTTTCCAGGCAGCAGTCCCAAAGgtaac---actagatgactgtcaatctgttgaactctctgtttcttcttcactgtattacttatatttctgttaatatgtcaatttgtaatttgacccatcta--
   ||| | ||| || ||||||||| |  ||||||| | |||||  ||||||||  | ||||  | |||||||||| |||||||||||||||| || ||||||     |  ||    || | || || ||   |   | ||       |||   |  |  || || || |   || || ||| |||| |||||    | | ||  
ACAACCAGGAAACCCACAAACAACAGTTATCCAGGCTACTTTTATGAATTTGTCCTCCAATACATATACAGATTTTGTTTTCCAGGCAGCAGTTCCTAAGgtattccaatcagtatgctattaagct-ttctgcatgcagtgctaagatcatcatgattattgtaattata--aagatatca-tttg-aatttactgcttttaac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30126008|gb|CB911347.1|CB911347
EST:     TGTCACCTAATATCTTTACAGATTTTATTTTCCAGGCAGCAGTCCCGAAG                         TTTCTTCAGTTGCACTTAGATTCAGCCAGTGGCAACACACTTCCTGCAAGT
genomic: TGTCACCTAATATCTTTACAGATTTTATTTTCCAGGCAGCAGTCCCAAAGgtaacactag ... tgagtcacagTTTCTTCAGTTGCACTTAGATTCAGCCAGTGGCAACACACTTCCTGCAAGT
EST: gi|156723711|gb|EV228503.1|EV228503
EST:     TGTCACCTAATATCTTTACAGATTTTATTTTCCAGGCAGCAGTCCCAAAG                         TTTCTTCAGTTGCACTTAGATTCAGCCAGTGGCAACACACTTCCTGCAAGT
genomic: TGTCACCTAATATCTTTACAGATTTTATTTTCCAGGCAGCAGTCCCAAAGgtaacactag ... tgagtcacagTTTCTTCAGTTGCACTTAGATTCAGCCAGTGGCAACACACTTCCTGCAAGT