1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...gttattctggatgcatgcattttgtcctcctcttatctatctccatattggcttgtcccttttgctattttatatgggcgaacctaatgttgtatgtcagATATGTTGCATTGAATATGCTGATGAAGGCTATTACAGTAGATGCGCAAGCAGTGCAGAGGCATCGGGCAACAATTTTGGAATGTGTAAAG
species | Vitis vinifera |
transcript | Vv01s0026g00310.t01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTCAAATCGTGACAACAATATCAG ATATGTTGCATTGAATATGCTGATGAAGGCTATTACAGTAGATGCGCAAGCEST: gi|37183449|gb|CF602803.1|CF602803
genomic: GTCAAATCGTGACAACAATATCAGgtaaattttc ... tgtatgtcagATATGTTGCATTGAATATGCTGATGAAGGCTATTACAGTAGATGCGCAAGC
EST: CCATCAATATCTTGNGAAGATTCTTGTNCAA-TCGTGACAACAATATCAG ATATGTTGCATTGAATATGCTGATGAA
genomic: CCATCAATATCTTGGGAAGATTCTTGT-CAAATCGTGACAACAATATCAGgtaaattttc ... tgtatgtcagATATGTTGCATTGAATATGCTGATGAA
tattggcttgtcccttttgctattttatatgggcgaacctaatgttgtatgtcagATATGTTGCATTGAATATGCTGATGAAGGCTATTACAGTAGATGCGCAAGCAGTGCAGAGGCATCGGGCAACAATTTTGGAATGTGTAAAG
acctaat putative branch site (score: 3)
ttttgctattttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattctggatgcatgcattttgtcctcctcttatctatctccatattggcttgtcccttttgctattttatatgggcgaacctaatgttgtatgtcagATATGTTGCATTGAATATGCTGATGAAGGCTATTACAGTAGATGCGCAAGCAGTGCAGAGGCATCGGGCAACAATTTTGGAATGTGTAAAG
- -attctgg
- - - - - - gcatgca
- - - - - - - - - - - - tcctcct
- - - - - - - - - - - - - - - - - - - atctcca
- - - - - - - - - - - - - - - - - - - - - - - - tggcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacctaa