Sequence
atgc intronic sequence ATGC exonic sequenceTACAGACCCTTTCCTCCATATCAGATTGCTTAGGCTTTTACGGGTGCTGGGCCAAGGTGATGCAGATGCTAGTGACTGTATGAATGACATTCTTGCTCAGgtctgttgcttctatgctttctctttcaaccatactttgttctattatttgagatatagtattctggtaattggcaatttgtgcttgcaagtctgttcac...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA08G39930.1 (Glycine max), 5'ss of exon 5
TACAGACCCTTTCCTCCATATCAGATTGCTTAGGCTTTTACGGGTGCTGGGCCAAGGTGATGCAGATGCTAGTGACTGTATGAATGACATTCTTGCTCAGgtctgttgcttctatgctttctctttcaaccatactttgttctattatttgagatatagtattctggtaattggcaatttgtgcttgcaagtctgttcac--------
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CACAGACCCTTTTCTCCATATCAGATTGCTTAGACTGCTGCGGGTATTGGGTGAAGATCATGCTGATGCTAGTGACTCTATGAATGACATACTTGCCCAGgtcagtg-----tacactgtcaatttta-tggttttgtattgtatttctgctgcagcgatgattgaattatttgtcatttctgcatt--gttctgttaatgaccttgg
upper sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: GLYMA01G03890.1 (Glycine max), 5'ss of exon 5
TACAGACCCTTTCCTCCATATCAGATTGCTTAGGCTTTTACGGGTGCTGGGCCAAGGTGATGCAGATGCTAGTGACTGTATGAATGACATTCTTGCTCAGgtctgttgc-ttctatgctttctctttcaaccatactttgttctattatttgagatatagtattctggtaattggcaatttgtgcttgcaagt-ctgttcac
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CACAGACCCATTTCTCCACATCAGATTGCTTAAACTTTTGCGAGTGTTGGGTGAAGGCAATGCTGATGCTAGTGACACCATGAATGACATACTTGCCCAGgtcagttgtgtgttatggtgcactttatggtattatattattatagtgttcatgctgcgatgattgggttatttgcaatttctgcatggctctgctgtgc--
upper sequence: Vv01s0026g00310.t01 (Vitis vinifera), 5'ss of exon 5
lower sequence: AT1G60070.2 (Arabidopsis thaliana), 5'ss of exon 5
TACAGACCCTTTCCTCCATATCAGATTGCTTAGGCTTTTACGGGTGCTGGGCCAAGGTGATGCAGATGCTAGTGACTGTATGAATGACATTCTTGCTCAGgtctgttgcttc-tatgctttc---tctttcaaccatactttgttctattatttgagatatagtattctg-gtaattggcaatttgtgcttgcaagtctgttcac
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TACGGATCCATTCCTTCACATCAGATTGCTCAAACTGTTGCGTGTTTTGGGCCAAGGGGATGCAGATGCCAGTGACTGTATGAATGATATACTTGCTCAGgtttgttcgtacgtagtctgtcgagcttttttttcaagcctttttctctt-ttcaaacaatggtaaaaaatgaagcctttttctcatctttataggttttg----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|37183449|gb|CF602803.1|CF602803EST: GCCAAGGTGATGCAGATGCTAGTGACTGTATGAATGACATTCTTGCTCAG GTGGCAACAAAAACTGAGTCAAACAAAAATGCTGGGAATGCCATTTTGTAT
genomic: GCCAAGGTGATGCAGATGCTAGTGACTGTATGAATGACATTCTTGCTCAGgtctgttgct ... ccttttctagGTGGCAACAAAAACTGAGTCAAACAAAAATGCTGGGAATGCCATTTTGTAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TACAGACCCTTTCCTCCATATCAGATTGCTTAGGCTTTTACGGGTGCTGGGCCAAGGTGATGCAGATGCTAGTGACTGTATGAATGACATTCTTGCTCAGgtctgttgcttctatgctttctctttcaaccatactttgttctattatttgagatatagtattctggtaattggcaatttgtgcttgcaagtctgttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG