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gtacttaatggattcttcatatgtctgcgtctgaagtgtacaactactaaaaatatttgcaatggaattgctatgagttgcattgttgtggactggtttgcacattttgcttacggtgttcaacaccctcagGTTGAACAATATCTTTTCGAGAATGGAGTAGAAGTCCGTGACTATGAGGCTGTGTTTGAAGACGTAGAAGCTCTTGCTTCTGACGAGCCCTCTGCATTGA
species | Physcomitrella patens |
transcript | PP1S96_73V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CCCGAGATTCTGCCTTTTACTATGTGAATAAGGCAAAAGTGGATTTAAAG GTTGAACAATATCTTTTCGAGAATGGAGTAGAAGTCCGTGACTATCAGGCTEST: gi|100373869|gb|BY967833.1|BY967833
genomic: CCCGAGATTCTGCCTTTTACTATGTGAATAAGGCAAAAGTGGATTTAAAGgtacttaatg ... acaccctcagGTTGAACAATATCTTTTCGAGAATGGAGTAGAAGTCCGTGACTATGAGGCT
EST: CCCGAGATTCTGCCTTTTACTATGTGAATAAGGCAAAAGTGGATTTAAAG GNTGAACAATATCTTTTCGAGAATGGAGTAGAAGTCCGTGACTATGAGGCTEST: gi|162249092|gb|FC420369.1|FC420369
genomic: CCCGAGATTCTGCCTTTTACTATGTGAATAAGGCAAAAGTGGATTTAAAGgtacttaatg ... acaccctcagGTTGAACAATATCTTTTCGAGAATGGAGTAGAAGTCCGTGACTATGAGGCT
EST: CCCGAGATTCTGCCTTTTACTATGTGAATAAGGCAAAAGTGGATTTAAAG GTTGAACAATATCTTTTCGAGAATGGAGTAGAAGTCCGTGACTATGAGGCTEST: gi|162255110|gb|FC430725.1|FC430725
genomic: CCCGAGATTCTGCCTTTTACTATGTGAATAAGGCAAAAGTGGATTTAAAGgtacttaatg ... acaccctcagGTTGAACAATATCTTTTCGAGAATGGAGTAGAAGTCCGTGACTATGAGGCT
EST: CCCGAGATTCTGCCTTTTACTATGTGAATAAGGCAAAAGTGGATTTAAAG GTTGAACAATATCTTTTCGAGAATGGAGTAGAAGTCCGTGACTATGAGGCTEST: gi|162153522|gb|FC330123.1|FC330123
genomic: CCCGAGATTCTGCCTTTTACTATGTGAATAAGGCAAAAGTGGATTTAAAGgtacttaatg ... acaccctcagGTTGAACAATATCTTTTCGAGAATGGAGTAGAAGTCCGTGACTATGAGGCT
EST: CCCGAGATTCTGCCTTTTACTATGTGAATAAGGCAAAAGTGGATTTAAAG GTTGAACAATATCTTTTCGAGAATGGAGTAGAAGTCCGTGACTATGAGGCTEST: gi|162167144|gb|FC343620.1|FC343620
genomic: CCCGAGATTCTGCCTTTTACTATGTGAATAAGGCAAAAGTGGATTTAAAGgtacttaatg ... acaccctcagGTTGAACAATATCTTTTCGAGAATGGAGTAGAAGTCCGTGACTATGAGGCT
EST: CCCGAGATTCTGCCTTTTACTATGTGAATAAGGCAAAAGTGGATTTAAAG GTTGAACAATATCTTTTCGAGAATGGAGTAGAAGTCCGTGACTATGAGGCT
genomic: CCCGAGATTCTGCCTTTTACTATGTGAATAAGGCAAAAGTGGATTTAAAGgtacttaatg ... acaccctcagGTTGAACAATATCTTTTCGAGAATGGAGTAGAAGTCCGTGACTATGAGGCT
ttgcattgttgtggactggtttgcacattttgcttacggtgttcaacaccctcagGTTGAACAATATCTTTTCGAGAATGGAGTAGAAGTCCGTGACTATGAGGCTGTGTTTGAAGACGTAGAAGCTCTTGCTTCTGACGAGCCCTCTGCATTGA
tgcttac putative branch site (score: 5)
caccctc putative PPT
acatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacttaatggattcttcatatgtctgcgtctgaagtgtacaactactaaaaatatttgcaatggaattgctatgagttgcattgttgtggactggtttgcacattttgcttacggtgttcaacaccctcagGTTGAACAATATCTTTTCGAGAATGGAGTAGAAGTCCGTGACTATGAGGCTGTGTTTGAAGACGTAGAAGCTCTTGCTTCTGACGAGCCCTCTGCATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC