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...ttcatagttcttaagatgtgaggattacgaatccgtgtcaatttatttgtattgccgattttgagtattgtcttaaacatccttttcattgatgttgcagAACCTTCATAAAGATGCAAACGTGGGGGTCGATCCGTGCTGTATCTCAATTGACACTGCTCACCGATGGGAACAGGCCTTTAGTAAGAACGGGCAGAAAC
species | Physcomitrella patens |
transcript | PP1S96_73V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTTGATGCGGATTGGAGAAGGCCCTTCTCTAGAAAACTGGATTGCTGAT AACCTTCATAAAGATGCAAACGTGGGGGTCGATCCGTGCTGTATCTCAATTEST: gi|100373869|gb|BY967833.1|BY967833
genomic: AGTTGATGCGGATTGGAGAAGACCCTTCTCTAGAAAACTGGATTGCTGATgtgagactcc ... gatgttgcagAACCTTCATAAAGATGCAAACGTGGGGGTCGATCCGTGCTGTATCTCAATT
EST: AGTTGATGCGGATTGGAGAAGACCCTTCTCTAGAAAACTGGATTGCTGAT AACCTTCATAAAGATGCAAACGTGGGGGTCGATCCGTGCTGTATCTCAATTEST: gi|162249092|gb|FC420369.1|FC420369
genomic: AGTTGATGCGGATTGGAGAAGACCCTTCTCTAGAAAACTGGATTGCTGATgtgagactcc ... gatgttgcagAACCTTCATAAAGATGCAAACGTGGGGGTCGATCCGTGCTGTATCTCAATT
EST: GGATTGGAGAAGGCCCTTCTCTAGAAAACTGGATTGCTGAT AACCTTCATAAAGATGCAAACGTGGGGGTCGATCCGTGCTGTATCTCAATTEST: gi|162255110|gb|FC430725.1|FC430725
genomic: GGATTGGAGAAGACCCTTCTCTAGAAAACTGGATTGCTGATgtgagactcc ... gatgttgcagAACCTTCATAAAGATGCAAACGTGGGGGTCGATCCGTGCTGTATCTCAATT
EST: AGTTGATGCGGATTGGAGAAGACCCTTCTCTAGAAAACTGGATTGCTGAT AACCTTCATAAAGATGCAAACGTGGGGGTCGATCCGTGCTGTATCTCAATTEST: gi|162153522|gb|FC330123.1|FC330123
genomic: AGTTGATGCGGATTGGAGAAGACCCTTCTCTAGAAAACTGGATTGCTGATgtgagactcc ... gatgttgcagAACCTTCATAAAGATGCAAACGTGGGGGTCGATCCGTGCTGTATCTCAATT
EST: AGTTGATGCGGATTGGAGAAGGCCCTTCTCTAGAAAACTGGATTGCTGAT AACCTTCATAAAGATGCAAACGTGGGGGTCGATCCGTGCTGTATCTCAATT
genomic: AGTTGATGCGGATTGGAGAAGACCCTTCTCTAGAAAACTGGATTGCTGATgtgagactcc ... gatgttgcagAACCTTCATAAAGATGCAAACGTGGGGGTCGATCCGTGCTGTATCTCAATT
tttgtattgccgattttgagtattgtcttaaacatccttttcattgatgttgcagAACCTTCATAAAGATGCAAACGTGGGGGTCGATCCGTGCTGTATCTCAATTGACACTGCTCACCGATGGGAACAGGCCTTTAGTAAGAACGGGCAGAAAC
cattgat putative branch site (score: 8)
ttaaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcatagttcttaagatgtgaggattacgaatccgtgtcaatttatttgtattgccgattttgagtattgtcttaaacatccttttcattgatgttgcagAACCTTCATAAAGATGCAAACGTGGGGGTCGATCCGTGCTGTATCTCAATTGACACTGCTCACCGATGGGAACAGGCCTTTAGTAAGAACGGGCAGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC