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gtaaaaatgagactatccttgctgcattgttgtttggtgctccttatctgcacacaaactcaaattcgagaggggtttacttgaacatttattcatagtgcaattttcgagcagGAATTGCGTTGATTACAGCTAAAGAAGCTTTACTATGGACCGATGGACGTTACTTTCTGCAAGCTACCCAACAGCTTAGTCATCAATGGAAGTTGATGCG
species | Physcomitrella patens |
transcript | PP1S96_73V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGATGCGGATAAAAGACGGGAGTTTGTATCAGGATTTAGTGGAAGCGCTG GAATTGCGTTGATTACAGCTAAAGAAGCTTTACTATGGACCGATGGACGTTEST: gi|162255110|gb|FC430725.1|FC430725
genomic: TGATGCGGATAAAAGACGGGAGTTTGTATCAGGATTTAGTGGAAGCGCTGgtaaaaatga ... tttcgagcagGAATTGCGTTGATTACAGCTAAAGAAGCTTTACTATGGACCGATGGACGTT
EST: TGATGCGGATAAAAGACGGGAGTTTGTATCAGGATTTAGTGGAAGCGCTG GAATTGCGTTGATTACAGCTAAAGAAGCTTTACTATGGACCGATGGACGTTEST: gi|162153522|gb|FC330123.1|FC330123
genomic: TGATGCGGATAAAAGACGGGAGTTTGTATCAGGATTTAGTGGAAGCGCTGgtaaaaatga ... tttcgagcagGAATTGCGTTGATTACAGCTAAAGAAGCTTTACTATGGACCGATGGACGTT
EST: TGATGCGGATAAAAGACGGGAGTTTGTATCAGGATTTAGTGGAAGCGCTG GAATTGCGTTGATTACAGCTAAAGAAGCTTTACTATGGACCGATGGACGTT
genomic: TGATGCGGATAAAAGACGGGAGTTTGTATCAGGATTTAGTGGAAGCGCTGgtaaaaatga ... tttcgagcagGAATTGCGTTGATTACAGCTAAAGAAGCTTTACTATGGACCGATGGACGTT
tcaaattcgagaggggtttacttgaacatttattcatagtgcaattttcgagcagGAATTGCGTTGATTACAGCTAAAGAAGCTTTACTATGGACCGATGGACGTTACTTTCTGCAAGCTACCCAACAGCTTAGTCATCAATGGAAGTTGATGCG
ttttc CT-rich tract
aacatttattcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaaatgagactatccttgctgcattgttgtttggtgctccttatctgcacacaaactcaaattcgagaggggtttacttgaacatttattcatagtgcaattttcgagcagGAATTGCGTTGATTACAGCTAAAGAAGCTTTACTATGGACCGATGGACGTTACTTTCTGCAAGCTACCCAACAGCTTAGTCATCAATGGAAGTTGATGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG