1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGCGTACCTTCTTCCTAGGATCAACAATGAAATCCCCCATGTTCAAAACAAAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAGgtacttcaaatttccctcagtttcatcaccacgaactagtacaccggcttcttcttctcctcctccagacattcagcgttaaacttggtttacagattcaaacgcacagggggcttttgtcagttccattcatctcaaatgatgagaaacttccgtgtccacgaaactaataagcgcaagagtttacaatgccgtgcag
species | Physcomitrella patens |
transcript | PP1S62_223V6.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAG TTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTATEST: gi|162278090|gb|FC453909.1|FC453909
genomic: AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAGgtacttcaaa ... tgccgtgcagTTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
EST: AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAG TTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTATEST: gi|67698728|gb|BJ958961.1|BJ958961
genomic: AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAGgtacttcaaa ... tgccgtgcagTTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
EST: AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAG TTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTATEST: gi|162193494|gb|FC370397.1|FC370397
genomic: AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAGgtacttcaaa ... tgccgtgcagTTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
EST: AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAG TTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTATEST: gi|100401210|gb|BY990887.1|BY990887
genomic: AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAGgtacttcaaa ... tgccgtgcagTTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
EST: AAGCTTTCA-GAAAAGATTCCAGCAGCTCANTCATTTAGTGTTAAATCAG TTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTATEST: gi|67575266|gb|BJ948090.1|BJ948090
genomic: AAGCTT-CAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAGgtacttcaaa ... tgccgtgcagTTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
EST: AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAG TTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTATEST: gi|100390994|gb|BY953004.1|BY953004
genomic: AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAGgtacttcaaa ... tgccgtgcagTTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
EST: AAGCTTCAAGAAAAGATTCCAGCAGCTNCA-TCATTTAGTGTTAATTCAG TTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
genomic: AAGCTTCAAGAAAAGATTCCAGCAGCT-CAATCATTTAGTGTTAATTCAGgtacttcaaa ... tgccgtgcagTTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCGTACCTTCTTCCTAGGATCAACAATGAAATCCCCCATGTTCAAAACAAAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAGgtacttcaaatttccctcagtttcatcaccacgaactagtacaccggcttcttcttctcctcctccagacattcagcgttaaacttggtttacagattcaaacgcacagggggcttttgtcagttccattcatctcaaatgatgagaaacttccgtgtccacgaaactaataagcgcaagagtttacaatgccgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA