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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTCGATGATCAATGCGGGAATGATGGAGTTACCGAATTTACGAAGGCTCTTCGTGATTTGTCGGGAGCCGAAGGGCGTTGCCTgtatgtgattctttctcacatctggacttgaattatgtatttctttgtttgctcattacaacggctgaccttccatgagtttctgagtgcacttaatgcc...

Basic information

species Physcomitrella patens
transcript PP1S62_223V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162278090|gb|FC453909.1|FC453909
EST:     GAATTTACGAAGGCTCTTCGTGATTTGTCGGGAGCCGAAGGGCGTTGCCT                         ATCCATTGGAAATGGAAGGATTGATTCTTGGTTGCTACGAATCGATAAACA
genomic: GAATTTACGAAGGCTCTTCGTGATTTGTCGGGAGCCGAAGGGCGTTGCCTgtatgtgatt ... tctgctgcagATCCATTGGAAATGGAAGGATTGATTCTTGGTTGCTACGAATCGATAAACA
EST: gi|162193494|gb|FC370397.1|FC370397
EST:     GAATTTACGAAGGCTCTTCGTGATTTGTCGGGAGCCGAAGGGCGTTGCCT                         ATCCATTGGAAATGGAAGGATTGATTCTTGGTTGCTACGAATCGATAAACA
genomic: GAATTTACGAAGGCTCTTCGTGATTTGTCGGGAGCCGAAGGGCGTTGCCTgtatgtgatt ... tctgctgcagATCCATTGGAAATGGAAGGATTGATTCTTGGTTGCTACGAATCGATAAACA
EST: gi|100401210|gb|BY990887.1|BY990887
EST:     GAATTTACGAAGGCTCTTCGTGATTTGTCGGGAGCCGAAGGGCGTTGCCT                         ATCCATTGGAAATGGAAGGATTGATTCTTGGTTGCTACGAATCGATAAACA
genomic: GAATTTACGAAGGCTCTTCGTGATTTGTCGGGAGCCGAAGGGCGTTGCCTgtatgtgatt ... tctgctgcagATCCATTGGAAATGGAAGGATTGATTCTTGGTTGCTACGAATCGATAAACA
EST: gi|18364011|gb|BJ196084.1|BJ196084
EST:     GAATTTACGAAGGCTCTTCGTGATTTGTCGGGAGCCGAAGGGCGTTGCCT                         ATCCATTGGAAATGGAAGGATTGATTCTTGGTTGCTACGAATCGATAAACA
genomic: GAATTTACGAAGGCTCTTCGTGATTTGTCGGGAGCCGAAGGGCGTTGCCTgtatgtgatt ... tctgctgcagATCCATTGGAAATGGAAGGATTGATTCTTGGTTGCTACGAATCGATAAACA
EST: gi|100390994|gb|BY953004.1|BY953004
EST:     GAATTTACGAAGGCTCTTCGTGATTTGTCGGGAGCCGAAGGGCGTTGCCT                         ATCCATTGGAAATGGAAGGATTGATTCTTGGTTGCTACGAATCGATAAACA
genomic: GAATTTACGAAGGCTCTTCGTGATTTGTCGGGAGCCGAAGGGCGTTGCCTgtatgtgatt ... tctgctgcagATCCATTGGAAATGGAAGGATTGATTCTTGGTTGCTACGAATCGATAAACA