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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttcaaatttccctcagtttcatcaccacgaactagtacaccggcttcttcttctcctcctccagacattcagcgttaaacttggtttacagattcaaacgcacagggggcttttgtcagttccattcatctcaaatgatgagaaacttccgtgtccacgaaactaataagcgcaagagtttacaatgccgtgcagTTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTATTATCCAGACAATGACGTGACGCTGTGCGAAGTACTACCCCTAAATGAG

Basic information

species Physcomitrella patens
transcript PP1S62_223V6.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67696544|gb|BJ956777.1|BJ956777
EST:     AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAG                         TTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
genomic: AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAGgtacttcaaa ... tgccgtgcagTTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
EST: gi|162278090|gb|FC453909.1|FC453909
EST:     AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAG                         TTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
genomic: AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAGgtacttcaaa ... tgccgtgcagTTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
EST: gi|67698728|gb|BJ958961.1|BJ958961
EST:     AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAG                         TTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
genomic: AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAGgtacttcaaa ... tgccgtgcagTTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
EST: gi|162193494|gb|FC370397.1|FC370397
EST:     AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAG                         TTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
genomic: AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAGgtacttcaaa ... tgccgtgcagTTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
EST: gi|100401210|gb|BY990887.1|BY990887
EST:     AAGCTTTCA-GAAAAGATTCCAGCAGCTCANTCATTTAGTGTTAAATCAG                         TTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
genomic: AAGCTT-CAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAGgtacttcaaa ... tgccgtgcagTTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
EST: gi|67575266|gb|BJ948090.1|BJ948090
EST:     AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAG                         TTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
genomic: AAAGCTTCAAGAAAAGATTCCAGCAGCTCAATCATTTAGTGTTAATTCAGgtacttcaaa ... tgccgtgcagTTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
EST: gi|100390994|gb|BY953004.1|BY953004
EST:     AAGCTTCAAGAAAAGATTCCAGCAGCTNCA-TCATTTAGTGTTAATTCAG                         TTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT
genomic: AAGCTTCAAGAAAAGATTCCAGCAGCT-CAATCATTTAGTGTTAATTCAGgtacttcaaa ... tgccgtgcagTTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaacttccgtgtccacgaaactaataagcgcaagagtttacaatgccgtgcagTTTGATGAGGACCTGGTACTTGTTCCACCACAGTCAGCTTGGTTCCAGTATTATCCAGACAATGACGTGACGCTGTGCGAAGTACTACCCCTAAATGAG
                    aactaat  putative branch site (score: 2)
                   aaactaataa  TA-rich tract