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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcactgggggcttcccattttttaccatttgattctgttctttcttttctttcttcacccccgtgtgaaactcagaacattctgcttaatcaacctagacagtagcagctattacactagatcaccctgatccatgagctgttgggatttatatttatattttttttgtcagTCTGCTTTGTACAAGGAGGATTGGATAGGACTGAGGTCTCTAAATGAAGAGGGCAAGGTTTCGTTTATCAGCCTCCCAAGTGATCACCTCAGCATCTCCA

Basic information

species Physcomitrella patens
transcript PP1S62_223V6.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67696544|gb|BJ956777.1|BJ956777
EST:     ATTATCCAGACAATGACGTGACGCTGTGCGAAGTACTACCCCTAAATGAG                         TCTGCTTTGTACAAGGAGGATTGGATAGGACTGAGGTCTCTAAATGAAGAG
genomic: ATTATCCAGACAATGACGTGACGCTGTGCGAAGTACTACCCCTAAATGAGgtatcactgg ... tttttgtcagTCTGCTTTGTACAAGGAGGATTGGATAGGACTGAGGTCTCTAAATGAAGAG
EST: gi|67698728|gb|BJ958961.1|BJ958961
EST:     ATTATCCAGACAATGACGTGACGCTGTGCGAAGTACTACCCCTAAATGAG                         TCTGCTTTGTACAAGGAGGATTGGATAGGACTGAGGTCTCTAAATGAAGAG
genomic: ATTATCCAGACAATGACGTGACGCTGTGCGAAGTACTACCCCTAAATGAGgtatcactgg ... tttttgtcagTCTGCTTTGTACAAGGAGGATTGGATAGGACTGAGGTCTCTAAATGAAGAG
EST: gi|162193494|gb|FC370397.1|FC370397
EST:     ATTATCCAGACAATGACGTGACGCTGTGCGAAGTACTACCCCTAAATGAG                         TCTGCTTTGTACAAGGAGGATTGGATAGGACTGAGGTCTCTAAAT
genomic: ATTATCCAGACAATGACGTGACGCTGTGCGAAGTACTACCCCTAAATGAGgtatcactgg ... tttttgtcagTCTGCTTTGTACAAGGAGGATTGGATAGGACTGAGGTCTCTAAAT
EST: gi|67575266|gb|BJ948090.1|BJ948090
EST:     ATTATCCAGACAATGACGTGACGCTGTGCGAAGTACTACCCCTAAATGAG                         TCTGCTTTGTACAAGGAGGATTGGATAGGACTGAGGTCTCTAAATGAAGAG
genomic: ATTATCCAGACAATGACGTGACGCTGTGCGAAGTACTACCCCTAAATGAGgtatcactgg ... tttttgtcagTCTGCTTTGTACAAGGAGGATTGGATAGGACTGAGGTCTCTAAATGAAGAG
EST: gi|100390994|gb|BY953004.1|BY953004
EST:     TTTATC-AGACAATGACGTGACGCTGTGCGAAGTACTACCCCTAAATGAG                         TCTGCTTTGTACAGGGAGGATTGGATAGGACTGAGGTCTCNTAA-TGAAGA
genomic: TT-ATCCAGACAATGACGTGACGCTGTGCGAAGTACTACCCCTAAATGAGgtatcactgg ... tttttgtcagTCTGCTTTGTACAAGGAGGATTGGATAGGACTGAGGTCTC-TAAATGAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagatcaccctgatccatgagctgttgggatttatatttatattttttttgtcagTCTGCTTTGTACAAGGAGGATTGGATAGGACTGAGGTCTCTAAATGAAGAGGGCAAGGTTTCGTTTATCAGCCTCCCAAGTGATCACCTCAGCATCTCCA
       ccctgat  putative branch site (score: 4)
                                    tttatatttttttt  putative PPT
                      tgttgggatttatatt  TA-rich tract