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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTGCCCTTGTGCAGATTTCTCAATGAAGGAATTGCACCCTTAATTTATTCCCCTATAGTGCAGgtatgcttctgcaccatatttctttcaacccatagaactgaaccgttgagtgaatgtcacacaagtttttatgcccccaattaggagaatttcatgtatg...

Basic information

species Physcomitrella patens
transcript PP1S62_223V6.1
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162278090|gb|FC453909.1|FC453909
EST:     GATTTCTCAATGAAGGAATTGCACCCTTAATTTATTCCCCTATAGTGCAG                         AGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCT
genomic: GATTTCTCAATGAAGGAATTGCACCCTTAATTTATTCCCCTATAGTGCAGgtatgcttct ... gtgagtgcagAGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCT
EST: gi|162193494|gb|FC370397.1|FC370397
EST:     GATTTCTCAATGAAGGAATTGCACCCTTAATTTATTCCCCTATAGTGCAG                         AGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCT
genomic: GATTTCTCAATGAAGGAATTGCACCCTTAATTTATTCCCCTATAGTGCAGgtatgcttct ... gtgagtgcagAGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCT
EST: gi|100401210|gb|BY990887.1|BY990887
EST:     GATTTCTCAATGAAGGAATTGCACCCTTAATTTATTCCCCTATAGTGCAG                         AGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCT
genomic: GATTTCTCAATGAAGGAATTGCACCCTTAATTTATTCCCCTATAGTGCAGgtatgcttct ... gtgagtgcagAGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCT
EST: gi|100390994|gb|BY953004.1|BY953004
EST:     GATTTCTCAATGAAGGAATTGCACCCTTAATTTATTCCCCTATAGTGCAG                         AGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCT
genomic: GATTTCTCAATGAAGGAATTGCACCCTTAATTTATTCCCCTATAGTGCAGgtatgcttct ... gtgagtgcagAGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCTTGCCCTTGTGCAGATTTCTCAATGAAGGAATTGCACCCTTAATTTATTCCCCTATAGTGCAGgtatgcttctgcaccatatttctttcaacccatagaactgaaccgttgagtgaatgtcacacaagtttttatgcccccaattaggagaatttcatgtatg

- - - - - - - - - - - - - - AAGGAA