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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctcggaattttaatctacgaagtagcgatcatccaaggtttctgtgtcattccaggagtcactgcggtgatggttaatgacttgggcttcttgtgagcagGGCTCGATGATCAATGCGGGAATGATGGAGTTACCGAATTTACGAAGGCTCTTCGTGATTTGTCGGGAGCCGAAGGGCGTTGCCT

Basic information

species Physcomitrella patens
transcript PP1S62_223V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162278090|gb|FC453909.1|FC453909
EST:     ATTGGAGGTTGCAACAGCTGCTGGGCCTCTACCTTTCATCGTCCTGCACG                         GGCTCGATGATCAATGCGGGAATGATGGAGTTACCGAATTTACGAAGGCTC
genomic: ATTGGAGGTTGCAACAGCTGCTGGGCCTCTACCTTTCATCGTCCTGCACGgtatgtggac ... ttgtgagcagGGCTCGATGATCAATGCGGGAATGATGGAGTTACCGAATTTACGAAGGCTC
EST: gi|162193494|gb|FC370397.1|FC370397
EST:     ATTGGAGGTTGCAACAGCTGCTGGGCCTCTACCTTTCATCGTCCTGCACG                         GGCTCGATGATCAATGCGGGAATGATGGAGTTACCGAATTTACGAAGGCTC
genomic: ATTGGAGGTTGCAACAGCTGCTGGGCCTCTACCTTTCATCGTCCTGCACGgtatgtggac ... ttgtgagcagGGCTCGATGATCAATGCGGGAATGATGGAGTTACCGAATTTACGAAGGCTC
EST: gi|100401210|gb|BY990887.1|BY990887
EST:     ATTGGAGGTTGCAACAGCTGCTGGGCCTCTACCTTTCATCGTCCTGCACG                         GGCTCGATGATCAATGCGGGAATGATGGAGTTACCGAATTTACGAAGGCTC
genomic: ATTGGAGGTTGCAACAGCTGCTGGGCCTCTACCTTTCATCGTCCTGCACGgtatgtggac ... ttgtgagcagGGCTCGATGATCAATGCGGGAATGATGGAGTTACCGAATTTACGAAGGCTC
EST: gi|18364011|gb|BJ196084.1|BJ196084
EST:     ATTGGAGGTTGCAACAGCTGCTGGGCCTCTACCTTTCATCGTCCTGCACG                         GGCTCGATGATCAATGCGGGAATGATGGAGTTACCGAATTTACGAAGGCTC
genomic: ATTGGAGGTTGCAACAGCTGCTGGGCCTCTACCTTTCATCGTCCTGCACGgtatgtggac ... ttgtgagcagGGCTCGATGATCAATGCGGGAATGATGGAGTTACCGAATTTACGAAGGCTC
EST: gi|100390994|gb|BY953004.1|BY953004
EST:     ATTGGAGGTTGCAACAGCTGCTGGGCCTCTACCTTTCATCGTCCTGCACG                         GGCTCGATGATCAATGCGGGAATGATGGAGTTACCGAATTTACGAAGGCTC
genomic: ATTGGAGGTTGCAACAGCTGCTGGGCCTCTACCTTTCATCGTCCTGCACGgtatgtggac ... ttgtgagcagGGCTCGATGATCAATGCGGGAATGATGGAGTTACCGAATTTACGAAGGCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcattccaggagtcactgcggtgatggttaatgacttgggcttcttgtgagcagGGCTCGATGATCAATGCGGGAATGATGGAGTTACCGAATTTACGAAGGCTCTTCGTGATTTGTCGGGAGCCGAAGGGCGTTGCCT
                          ggttaat  putative branch site (score: 4)
                                         cttcttgt  putative PPT
                            ttaatga  TA-rich tract