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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCTgtaagtcactcatgttcgtagaaaacgtattttgctccaatgcacttccagtctctctttgtggtgcatctaacatgattttcccacaaggaatttgttgatcaagtttcatcttttggtggatag

Basic information

species Physcomitrella patens
transcript PP1S62_223V6.1
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162278090|gb|FC453909.1|FC453909
EST:     AGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCT                         GAACTGTCAACGTATTACAAACGTGCGTACCTTCTTCCTAGGATCAACAAT
genomic: AGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCTgtaagtcact ... tggtggatagGAACTGTCAACGTATTACAAACGTGCGTACCTTCTTCCTAGGATCAACAAT
EST: gi|162193494|gb|FC370397.1|FC370397
EST:     AGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCT                         GAACTGTCAACGTATTACAAACGTGCGTACCTTCTTCCTAGGATCAACAAT
genomic: AGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCTgtaagtcact ... tggtggatagGAACTGTCAACGTATTACAAACGTGCGTACCTTCTTCCTAGGATCAACAAT
EST: gi|100401210|gb|BY990887.1|BY990887
EST:     AGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCT                         GAACTGTNCA-CGTATTACAAACGTGCGTACCTTCTTCCTAGGATCAACAA
genomic: AGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCTgtaagtcact ... tggtggatagGAACTGT-CAACGTATTACAAACGTGCGTACCTTCTTCCTAGGATCAACAA
EST: gi|67575266|gb|BJ948090.1|BJ948090
EST:     AGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCT                         GAACTGTNCA-CGTATTACAAACGTGCGTACCTTCTTCCTAGGATCAACAA
genomic: AGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCTgtaagtcact ... tggtggatagGAACTGT-CAACGTATTACAAACGTGCGTACCTTCTTCCTAGGATCAACAA
EST: gi|100390994|gb|BY953004.1|BY953004
EST:     AGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCT                         GAACTGTCAACGTATTACAAACGTGCGTACCTTCTTCCTAGGATCAACAAT
genomic: AGCAATTTCGCACCAAGTGGTTACTTCAAAATCCCCTCTgtaagtcact ... tggtggatagGAACTGTCAACGTATTACAAACGTGCGTACCTTCTTCCTAGGATCAACAAT