1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gtgaaggagagcctcaattcacaactaattttgtacaaggctagggagtggtgctggattgttgattttgctaaggaacgtcacgcttgttttgtgccagTGTATCCAAGGTCTTCCTGAAGGTGGATTGAGGCGGATTATCCTCACAGCATCCGGAGGTGCATTCAG
species | Physcomitrella patens |
transcript | PP1S62_157V6.4 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATGGCATTAACATCTTGCCTGCTGATTCTGAGCACTCGGCCATCTTCCAG TGTATCCAAGGTCTTCCTGAAGGTGGATTGAGGCGGATTATCCTCACAGCAEST: gi|100442899|gb|BY963394.1|BY963394
genomic: ATGGCATTAACATCTTGCCTGCTGATTCTGAGCACTCGGCCATCTTCCAGgttttgctca ... tttgtgccagTGTATCCAAGGTCTTCCTGAAGGTGGATTGAGGCGGATTATCCTCACAGCA
EST: ATGGCATTAACATCTTGCCTGCTGATTCTGAGCACTCGGCCATCTTCCAG TGTATCCAAGGTCTTCCTGAAGGTGGATTGAGGCGGATTATCCTCACAGCAEST: gi|162272851|gb|FC448007.1|FC448007
genomic: ATGGCATTAACATCTTGCCTGCTGATTCTGAGCACTCGGCCATCTTCCAGgttttgctca ... tttgtgccagTGTATCCAAGGTCTTCCTGAAGGTGGATTGAGGCGGATTATCCTCACAGCA
EST: ATGGCATTAACATCTTGCCTGCTGATTCTGAGCACTCGGCCATCTTCCAG TGTATCCAAGGTCTTCCTGAAGGTGGATTGAGGCGGATTATCCTCACAGCAEST: gi|162179792|gb|FC356383.1|FC356383
genomic: ATGGCATTAACATCTTGCCTGCTGATTCTGAGCACTCGGCCATCTTCCAGgttttgctca ... tttgtgccagTGTATCCAAGGTCTTCCTGAAGGTGGATTGAGGCGGATTATCCTCACAGCA
EST: ATGGCATTAACATCTTGCCTGCTGATTCTGAGCACTCGGCCATCTTCCAG TGTATCCAAGGTCTTCCTGAEST: gi|162208298|gb|FC384402.1|FC384402
genomic: ATGGCATTAACATCTTGCCTGCTGATTCTGAGCACTCGGCCATCTTCCAGgttttgctca ... tttgtgccagTGTATCCAAGGTCTTCCTGA
EST: ATGGCATTAACATCTTGCCTGCTGATTCTGAGCACTCGGCCATCTTCCAG TGTATCCAAGGTCTTCCTGAAGGTGGATTGAGGCGGATTATCCTCACAGCAEST: gi|162163958|gb|FC339868.1|FC339868
genomic: ATGGCATTAACATCTTGCCTGCTGATTCTGAGCACTCGGCCATCTTCCAGgttttgctca ... tttgtgccagTGTATCCAAGGTCTTCCTGAAGGTGGATTGAGGCGGATTATCCTCACAGCA
EST: ATGGCATTAACATCTTGCCTGCTGATTCTGAGCACTCGGCCATCTTCCAG TGTATCCAAGGTCTTCCTGAAGGTGGATTGAGGCGGATTATCCTCACAGCA
genomic: ATGGCATTAACATCTTGCCTGCTGATTCTGAGCACTCGGCCATCTTCCAGgttttgctca ... tttgtgccagTGTATCCAAGGTCTTCCTGAAGGTGGATTGAGGCGGATTATCCTCACAGCA
gagtggtgctggattgttgattttgctaaggaacgtcacgcttgttttgtgccagTGTATCCAAGGTCTTCCTGAAGGTGGATTGAGGCGGATTATCCTCACAGCATCCGGAGGTGCATTCAG
tgttgat putative branch site (score: 4)
cttgtttt putative PPT
ttgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaggagagcctcaattcacaactaattttgtacaaggctagggagtggtgctggattgttgattttgctaaggaacgtcacgcttgttttgtgccagTGTATCCAAGGTCTTCCTGAAGGTGGATTGAGGCGGATTATCCTCACAGCATCCGGAGGTGCATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA