Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGTTAAGAACGCTTCATCAGTGCCTGCTTTAAAGGAAGCCCTTGCTGGATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAGgtttgtatttgtcttacgggacacgcagcacgcgtaggaaggagcttcggcttgtgttcagttgtctgtttgtgcttcatctacagctgccataacttgt...

Basic information

species Physcomitrella patens
transcript PP1S62_157V6.4
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208352746|gb|DC905880.1|DC905880
EST:     GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAG                         GTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
genomic: GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAGgtttgtattt ... tcccactcagGTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
EST: gi|162156416|gb|FC332648.1|FC332648
EST:     GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAG                         GTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
genomic: GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAGgtttgtattt ... tcccactcagGTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
EST: gi|100409386|gb|BY991986.1|BY991986
EST:     GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAG                         GTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
genomic: GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAGgtttgtattt ... tcccactcagGTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
EST: gi|162250938|gb|FC425760.1|FC425760
EST:     GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAG                         GTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
genomic: GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAGgtttgtattt ... tcccactcagGTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
EST: gi|100442899|gb|BY963394.1|BY963394
EST:     GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAG                         GTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
genomic: GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAGgtttgtattt ... tcccactcagGTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
EST: gi|162272851|gb|FC448007.1|FC448007
EST:     GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAG                         GTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
genomic: GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAGgtttgtattt ... tcccactcagGTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
EST: gi|162179792|gb|FC356383.1|FC356383
EST:     GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAG                         GTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
genomic: GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAGgtttgtattt ... tcccactcagGTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
EST: gi|162208298|gb|FC384402.1|FC384402
EST:     GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAG                         GTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
genomic: GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAGgtttgtattt ... tcccactcagGTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
EST: gi|162163958|gb|FC339868.1|FC339868
EST:     GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAG                         GTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
genomic: GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAGgtttgtattt ... tcccactcagGTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
EST: gi|100375682|gb|BY968157.1|BY968157
EST:     GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAG                         GTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
genomic: GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAGgtttgtattt ... tcccactcagGTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
EST: gi|100379666|gb|BY949883.1|BY949883
EST:     GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAG                         GTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
genomic: GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAGgtttgtattt ... tcccactcagGTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
EST: gi|162168654|gb|FC343916.1|FC343916
EST:     GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAG                         GTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC
genomic: GATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAGgtttgtattt ... tcccactcagGTGGCGAGGCATCCAGAAGCCGTCACTGTCGTCACAGGGATCGTTGGTTGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCAGTTAAGAACGCTTCATCAGTGCCTGCTTTAAAGGAAGCCCTTGCTGGATTGGACAAGCTCCCAGAAATCATGGTGGGCGAGGAAGGCATTGTGGAGgtttgtatttgtcttacgggacacgcagcacgcgtaggaaggagcttcggcttgtgttcagttgtctgtttgtgcttcatctacagctgccataacttgt

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG