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gtaagtgtgggctgctctaaaactctagattgtttacaagttcacatcaagaatgtgggcatttgtagctggtgatatgaacataataagatggaatagtcgtctctggtgacaacggtttgacgtcttgtatgtttctggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGCTCCAAG
species | Physcomitrella patens |
transcript | PP1S62_157V6.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|18329065|gb|BJ161071.1|BJ161071
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|18345934|gb|BJ177977.1|BJ177977
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|162156416|gb|FC332648.1|FC332648
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|18343769|gb|BJ175807.1|BJ175807
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCATAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|18347535|gb|BJ179582.1|BJ179582
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|18346948|gb|BJ178993.1|BJ178993
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|100451228|gb|CJ974660.1|CJ974660
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|18329484|gb|BJ161490.1|BJ161490
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|18354978|gb|BJ187037.1|BJ187037
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|100409386|gb|BY991986.1|BY991986
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|18328096|gb|BJ160100.1|BJ160100
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|18371305|gb|BJ202907.1|BJ202907
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|18363878|gb|BJ195950.1|BJ195950
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|18358530|gb|BJ190589.1|BJ190589
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|162179792|gb|FC356383.1|FC356383
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|100375682|gb|BY968157.1|BY968157
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|100379666|gb|BY949883.1|BY949883
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGEST: gi|162168654|gb|FC343916.1|FC343916
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
gaatagtcgtctctggtgacaacggtttgacgtcttgtatgtttctggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGCTCCAAG
gtttgac putative branch site (score: 4)
tgtttct putative PPT
tatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtgggctgctctaaaactctagattgtttacaagttcacatcaagaatgtgggcatttgtagctggtgatatgaacataataagatggaatagtcgtctctggtgacaacggtttgacgtcttgtatgtttctggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGGCTCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG