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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGCTTGGCCTGGAAGGGCTGTCATAGAAGACGTTAAGATCAGAAACGGTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatatactgttctggtgcatactggtccttgcataatacgttacagttccttatttcctgacaagagaatacatttgaataatctacaatgaatta...

Basic information

species Physcomitrella patens
transcript PP1S62_157V6.4
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208352746|gb|DC905880.1|DC905880
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGACTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|18329065|gb|BJ161071.1|BJ161071
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|18345934|gb|BJ177977.1|BJ177977
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|162156416|gb|FC332648.1|FC332648
EST:     GTCCGAAACCTATCTCCCTTATCGGATCTACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|18343769|gb|BJ175807.1|BJ175807
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|18347535|gb|BJ179582.1|BJ179582
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|18346948|gb|BJ178993.1|BJ178993
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|100451228|gb|CJ974660.1|CJ974660
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAANATCCGAATAANTTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|18329484|gb|BJ161490.1|BJ161490
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|18354978|gb|BJ187037.1|BJ187037
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|100409386|gb|BY991986.1|BY991986
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|18328096|gb|BJ160100.1|BJ160100
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|162250938|gb|FC425760.1|FC425760
EST:     GTCCGAAACCTATCTCCCTTATCGGATCTACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|18371305|gb|BJ202907.1|BJ202907
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|100442899|gb|BY963394.1|BY963394
EST:     CGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: CGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|18363878|gb|BJ195950.1|BJ195950
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|162272851|gb|FC448007.1|FC448007
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|18358530|gb|BJ190589.1|BJ190589
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|162179792|gb|FC356383.1|FC356383
EST:     GTCCGAAACCTATCTCCCTTATCGGATCTACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|162208298|gb|FC384402.1|FC384402
EST:     GTCCGAAACCTATCTCCCTTATCGGATCTACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|100375682|gb|BY968157.1|BY968157
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|100379666|gb|BY949883.1|BY949883
EST:     GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
EST: gi|162168654|gb|FC343916.1|FC343916
EST:     GTCCGAAACCTATCTCCCTTATCGGATCTACTGGCTCTATCGGTACACAG                         ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG
genomic: GTCCGAAACCTATCTCCCTTATCGGATCGACTGGCTCTATCGGTACACAGgtgacatata ... tgtgttgtagACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTG