1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctttacatctgaatacactcctaggctggtatttatgcccttaacatattactaaatgctgttttcttttcaagaatttcagacttggttgca...
species | Physcomitrella patens |
transcript | PP1S62_157V6.4 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|18329065|gb|BJ161071.1|BJ161071
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|18345934|gb|BJ177977.1|BJ177977
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|162156416|gb|FC332648.1|FC332648
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|18343769|gb|BJ175807.1|BJ175807
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|18347535|gb|BJ179582.1|BJ179582
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCCTCGTGGCAGTTAAGAACGCTTCATCAGTEST: gi|18346948|gb|BJ178993.1|BJ178993
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCC-TCGTGGCAGTTAAGAACGCTTCATCAGT
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTEST: gi|100451228|gb|CJ974660.1|CJ974660
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCT
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGNTGGCTGAACAG ATNAANGCGTTCAGACCTANCCTCGTGGCAGTTAANANCGCTTCATCAGTGEST: gi|100409386|gb|BY991986.1|BY991986
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|18328096|gb|BJ160100.1|BJ160100
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGAEST: gi|162250938|gb|FC425760.1|FC425760
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGA
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|18371305|gb|BJ202907.1|BJ202907
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|100442899|gb|BY963394.1|BY963394
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|18363878|gb|BJ195950.1|BJ195950
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|162272851|gb|FC448007.1|FC448007
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|18358530|gb|BJ190589.1|BJ190589
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|162179792|gb|FC356383.1|FC356383
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|162208298|gb|FC384402.1|FC384402
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|162163958|gb|FC339868.1|FC339868
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: GTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|100375682|gb|BY968157.1|BY968157
genomic: GTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|100379666|gb|BY949883.1|BY949883
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTGEST: gi|162168654|gb|FC343916.1|FC343916
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
EST: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAG ATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
genomic: AGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctt ... tctgtttcagATTAAGGCGTTCAGACCTAGCCTCGTGGCAGTTAAGAACGCTTCATCAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCCTCGACATTGTCGCCGAAAATCCGAATAAATTCAAGGTCGTGGCTTTGGCTGCTGGTTCCAATGTCAGCTTGTTGGCTGAACAGgtaatttctttacatctgaatacactcctaggctggtatttatgcccttaacatattactaaatgctgttttcttttcaagaatttcagacttggttgca
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT