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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgggctgctctaaaactctagattgtttacaagttcacatcaagaatgtgggcatttgtagctggtgatatgaacataataagatggaatagtcgtctctggtgacaacggtttgacgtcttgtatgtttctggggtgcag

Basic information

species Physcomitrella patens
transcript PP1S62_157V6.4
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208352746|gb|DC905880.1|DC905880
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|18329065|gb|BJ161071.1|BJ161071
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|18345934|gb|BJ177977.1|BJ177977
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|162156416|gb|FC332648.1|FC332648
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|18343769|gb|BJ175807.1|BJ175807
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCATAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|18347535|gb|BJ179582.1|BJ179582
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|18346948|gb|BJ178993.1|BJ178993
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|100451228|gb|CJ974660.1|CJ974660
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|18329484|gb|BJ161490.1|BJ161490
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|18354978|gb|BJ187037.1|BJ187037
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|100409386|gb|BY991986.1|BY991986
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|18328096|gb|BJ160100.1|BJ160100
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|18371305|gb|BJ202907.1|BJ202907
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|18363878|gb|BJ195950.1|BJ195950
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|18358530|gb|BJ190589.1|BJ190589
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|162179792|gb|FC356383.1|FC356383
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|100375682|gb|BY968157.1|BY968157
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|100379666|gb|BY949883.1|BY949883
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
EST: gi|162168654|gb|FC343916.1|FC343916
EST:     TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATA                         AAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG
genomic: TGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgg ... tggggtgcagAAGGACGTGGGAATGTCTGGTATGGATATGTCTTCCTTCTCTGGCTGCAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATAATATTGCTCCGAAAGTCATGGCTCTGAAGACAGCAGCCATGACAGGAATCTCCGGGACCGTGTCACTGGAATCCGGTTTCAGAGCAATAgtaagtgtgggctgctctaaaactctagattgtttacaagttcacatcaagaatgtgggcatttgtagctggtgatatgaacataataagatggaatagtcgtctctggtgacaacggtttgacgtcttgtatgtttctggggtgcag

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