Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCGTTCCCATCAACCTGGCCGCCGCCGTGATTGCCGAAGTTATCCTGGTTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccctgcaccaattcgctgtcatgtggagaaaaaggtggtagacaagacagaggtggccttatcatggtttgggggtgtggcgaggtgaatcgatctttgaactgtccacgttctgaccgtgagggatgtttatggattgcag

Basic information

species Physcomitrella patens
transcript PP1S628_7V6.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S628_7V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ18942 (Selaginella moellendorffii), 5'ss of exon 5
------------CACCGTTCCCATCAACCTGGCCGCCGCCGTGATTGCCGAAGTTATCCTGGTTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccctgcaccaattcgctgtcatgtggagaaaaaggtggtagacaagacagaggtggccttatcatggtttgggggtgtggcgaggtgaatcgatctttgaactgtccacgttctgaccgtgagggatgtttatggattgcag
             | | |||| |||||||| | |   || ||  ||||||| || ||||| ||||||||||||||||||||||||||||  |||||  ||        | |    |      | |    || |     |  |||   | ||  ||| ||                                                                                                     
TTACTTCGGAGCAAACATTCCAATCAACCTCGTCCTGGCTGTCCTTGCCGAGGTGATCCTTGTTGGAGGAGCTGAGTACTACAGATCGATAAACAA-CCTGgtaagaaaccaaagttctttagaaagtttttgaaacaacttggg--agaacctggcag-----------------------------------------------------------------------------------------------------

upper sequence: PP1S628_7V6.1 (Physcomitrella patens), 5'ss of exon 5
lower sequence: EFJ11555 (Selaginella moellendorffii), 5'ss of exon 5
------------CACCGTTCCCATCAACCTGGCCGCCGCCGTGATTGCCGAAGTTATCCTGGTTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccctgcaccaattcgctgtcatgtggagaaaaaggtggtagacaagacagaggtggccttatcatggtttgggggtgtggcgaggtgaatcgatctttgaactgtccacgttctgaccgtgagggatgtttatggattgcag
             | | |||| |||||||| | |   || ||  ||||||| || ||||| ||||||||||||||||||||||||||||  |||||  ||        | |    |      | |  | || |     |  |||   | ||  ||| ||                                                                                                     
TTACTTCGGAGCAAACATTCCAATCAACCTCGTCCTGGCTGTTCTTGCCGAGGTGATCCTTGTTGGAGGAGCTGAGTACTACAGATCGATAAACAA-CCTGgtaagaaaccaaagttctttagaaagattttgaaacaacttggg--agaacctggcag-----------------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162202902|gb|FC380287.1|FC380287
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162174525|gb|FC350180.1|FC350180
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162161781|gb|FC337909.1|FC337909
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCG
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCG
EST: gi|7067555|gb|AW497410.1|AW497410
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162193108|gb|FC371493.1|FC371493
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162225032|gb|FC401448.1|FC401448
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162241896|gb|FC414420.1|FC414420
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|208347413|gb|DC909748.1|DC909748
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACA-GTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCAT
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCAT
EST: gi|162174524|gb|FC350179.1|FC350179
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|100410674|gb|BY992213.1|BY992213
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162253156|gb|FC428988.1|FC428988
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162202901|gb|FC380286.1|FC380286
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|208346866|gb|DC905424.1|DC905424
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTGGGATAGGCTGCACCCAGAAGGTGCATTCGACCCTTTGGGGCTNGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|208346557|gb|DC916823.1|DC916823
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162236455|gb|FC412822.1|FC412822
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|100376765|gb|BY949454.1|BY949454
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTTGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162156101|gb|FC332268.1|FC332268
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162247403|gb|FC421446.1|FC421446
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162253519|gb|FC429542.1|FC429542
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|67699195|gb|BJ959428.1|BJ959428
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162241897|gb|FC414421.1|FC414421
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162251238|gb|FC428517.1|FC428517
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162240080|gb|FC414905.1|FC414905
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162193109|gb|FC371494.1|FC371494
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|67692095|gb|BJ952328.1|BJ952328
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162153132|gb|FC329538.1|FC329538
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162195051|gb|FC371352.1|FC371352
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|208351135|gb|DC921353.1|DC921353
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162247402|gb|FC421445.1|FC421445
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162253520|gb|FC429543.1|FC429543
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|37822165|gb|BJ580231.1|BJ580231
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162219018|gb|FC394913.1|FC394913
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCAT
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCAT
EST: gi|208374875|gb|DC956148.1|DC956148
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162219285|gb|FC395281.1|FC395281
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162274366|gb|FC450393.1|FC450393
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGC
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGC
EST: gi|162237110|gb|FC413269.1|FC413269
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGGCTTGC
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGG-CTTGC
EST: gi|162216521|gb|FC392418.1|FC392418
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|67697506|gb|BJ957739.1|BJ957739
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|100411930|gb|BY992410.1|BY992410
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162274365|gb|FC450392.1|FC450392
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162214539|gb|FC391506.1|FC391506
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|67577835|gb|BJ950002.1|BJ950002
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCG
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCG
EST: gi|162216522|gb|FC392419.1|FC392419
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|6227402|gb|AW156001.1|AW156001
EST:     CTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: CTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162206674|gb|FC382432.1|FC382432
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162153188|gb|FC329594.1|FC329594
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162160912|gb|FC337469.1|FC337469
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|67720541|gb|BJ970800.1|BJ970800
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|208346153|gb|DC917106.1|DC917106
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162153133|gb|FC329539.1|FC329539
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGGCT-GC
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGG-CTTGC
EST: gi|6102198|gb|AW126668.1|AW126668
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162241737|gb|FC417264.1|FC417264
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162225031|gb|FC401447.1|FC401447
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|208344427|gb|DC916764.1|DC916764
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|67695872|gb|BJ956105.1|BJ956105
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|19787747|gb|BQ040668.1|BQ040668
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162156102|gb|FC332269.1|FC332269
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162214540|gb|FC391507.1|FC391507
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162236454|gb|FC412821.1|FC412821
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162161780|gb|FC337908.1|FC337908
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162274510|gb|FC450745.1|FC450745
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|208367634|gb|DC954993.1|DC954993
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162237661|gb|FC413692.1|FC413692
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162264448|gb|FC441121.1|FC441121
EST:     GTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCA
EST: gi|162240555|gb|FC416043.1|FC416043
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162241736|gb|FC417263.1|FC417263
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162160913|gb|FC337470.1|FC337470
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|208375644|gb|DC902861.1|DC902861
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACC
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACC
EST: gi|162237109|gb|FC413268.1|FC413268
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|208382319|gb|DC919307.1|DC919307
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162251237|gb|FC428516.1|FC428516
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|100415652|gb|BY992938.1|BY992938
EST:     TGGAGGAGCTGAGTACTACAGATCGACTAANCA-GTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCCTTTGGGGCTTGC
genomic: TGGAGGAGCTGAGTACTACAGATCGACTAA-CAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCC-TTTGGGGCTTGC
EST: gi|208390232|gb|DC941997.1|DC941997
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGNATCG                         GACTTGGATAGNCTGCACCCAGGANGTGCATTC
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTC
EST: gi|162219284|gb|FC395280.1|FC395280
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162219017|gb|FC394912.1|FC394912
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
EST: gi|162225310|gb|FC402076.1|FC402076
EST:     TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCG                         GACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA
genomic: TTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 121

CACCGTTCCCATCAACCTGGCCGCCGCCGTGATTGCCGAAGTTATCCTGGTTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccct ... tggattgcagGACTTGGATAGGCTGCACCCAGGAGGTGCATTCGACCCTTTGGGGCTTGCAAAGGACCCCGACCAGTTCGCGCTGTTGAAGGTGAAGGAGATCAAGAACG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACCGTTCCCATCAACCTGGCCGCCGCCGTGATTGCCGAAGTTATCCTGGTTGGAGGAGCTGAGTACTACAGATCGACTAACAAGTCTCCCCTCGGATCGgtatgtccctgcaccaattcgctgtcatgtggagaaaaaggtggtagacaagacagaggtggccttatcatggtttgggggtgtggcgaggtgaatcgatctttgaactgtccacgttctgaccgtgagggatgtttatggattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA