Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttcttgttctctttctgttcgcatgtctaggaagaacagtttaccatattttaatcaccctcgccgatgtagaagggttcaatgaaatgggttgcgttgaggctttctaaatgtgtgaccgaattgtgacaatgcag

Basic information

species Physcomitrella patens
transcript PP1S628_7V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162202902|gb|FC380287.1|FC380287
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162174525|gb|FC350180.1|FC350180
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162161781|gb|FC337909.1|FC337909
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162193108|gb|FC371493.1|FC371493
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162225032|gb|FC401448.1|FC401448
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|208347413|gb|DC909748.1|DC909748
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|67572872|gb|BJ945696.1|BJ945696
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|100410674|gb|BY992213.1|BY992213
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|208346866|gb|DC905424.1|DC905424
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|208346557|gb|DC916823.1|DC916823
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|100376765|gb|BY949454.1|BY949454
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|208380608|gb|DC903198.1|DC903198
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCCCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162247403|gb|FC421446.1|FC421446
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|67570056|gb|BJ942880.1|BJ942880
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162241897|gb|FC414421.1|FC414421
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162274511|gb|FC450746.1|FC450746
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162251238|gb|FC428517.1|FC428517
EST:     GTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: GTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162193109|gb|FC371494.1|FC371494
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|100406447|gb|BY955631.1|BY955631
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|67572822|gb|BJ945646.1|BJ945646
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162195051|gb|FC371352.1|FC371352
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162219018|gb|FC394913.1|FC394913
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|100429840|gb|BY978115.1|BY978115
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162219285|gb|FC395281.1|FC395281
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162274366|gb|FC450393.1|FC450393
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162237110|gb|FC413269.1|FC413269
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|100358347|gb|BY983859.1|BY983859
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|7207165|gb|AW561168.1|AW561168
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGATGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|100373966|gb|BY967879.1|BY967879
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAAGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|100411930|gb|BY992410.1|BY992410
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162274365|gb|FC450392.1|FC450392
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|100385042|gb|BY987505.1|BY987505
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|19790106|gb|BQ041699.1|BQ041699
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|67577835|gb|BJ950002.1|BJ950002
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162216522|gb|FC392419.1|FC392419
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|100413952|gb|BY975050.1|BY975050
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|208359589|gb|DC943159.1|DC943159
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162160912|gb|FC337469.1|FC337469
EST:     AGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCTTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: AGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|67720541|gb|BJ970800.1|BJ970800
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|208346153|gb|DC917106.1|DC917106
EST:     AAGGATGAGANTCCTGCGTACCCCACCGGAGAANT-CCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: AAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162153133|gb|FC329539.1|FC329539
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|100374459|gb|BY985801.1|BY985801
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|67572500|gb|BJ945324.1|BJ945324
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162241737|gb|FC417264.1|FC417264
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|67568888|gb|BJ941712.1|BJ941712
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|19786216|gb|BQ040450.1|BQ040450
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162156102|gb|FC332269.1|FC332269
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|100384673|gb|BY950663.1|BY950663
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGCTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|18343015|gb|BJ175052.1|BJ175052
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|100446890|gb|CJ971189.1|CJ971189
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|100452434|gb|CJ975269.1|CJ975269
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|100392679|gb|BY971830.1|BY971830
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162264448|gb|FC441121.1|FC441121
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|208384855|gb|DC907468.1|DC907468
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|67574114|gb|BJ946938.1|BJ946938
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162153189|gb|FC329595.1|FC329595
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|18327358|gb|BJ159360.1|BJ159360
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162160913|gb|FC337470.1|FC337470
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|208375644|gb|DC902861.1|DC902861
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|208376708|gb|DC902917.1|DC902917
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162251237|gb|FC428516.1|FC428516
EST:     GTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: GTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|100415652|gb|BY992938.1|BY992938
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|208390232|gb|DC941997.1|DC941997
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
EST: gi|162225310|gb|FC402076.1|FC402076
EST:     TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA                         CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG
genomic: TTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 184

GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttc ... gacaatgcagCTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGAgtacgttttcttgttctctttctgttcgcatgtctaggaagaacagtttaccatattttaatcaccctcgccgatgtagaagggttcaatgaaatgggttgcgttgaggctttctaaatgtgtgaccgaattgtgacaatgcag

- - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT