Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatccgatatgtttttgtttctcatttaccacgacgatgtcgcgatttggagtctacgacttaaatttttctgacggaaatgtttcttcag

Basic information

species Physcomitrella patens
transcript PP1S628_7V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162202902|gb|FC380287.1|FC380287
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162174525|gb|FC350180.1|FC350180
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162161781|gb|FC337909.1|FC337909
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162193108|gb|FC371493.1|FC371493
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162225032|gb|FC401448.1|FC401448
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162241896|gb|FC414420.1|FC414420
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|208347413|gb|DC909748.1|DC909748
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162174524|gb|FC350179.1|FC350179
EST:     CAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGNTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: CAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|67572872|gb|BJ945696.1|BJ945696
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|100410674|gb|BY992213.1|BY992213
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162253156|gb|FC428988.1|FC428988
EST:     GGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: GGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|208346866|gb|DC905424.1|DC905424
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCANGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|208346557|gb|DC916823.1|DC916823
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|100376765|gb|BY949454.1|BY949454
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|208380608|gb|DC903198.1|DC903198
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162247403|gb|FC421446.1|FC421446
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162253519|gb|FC429542.1|FC429542
EST:     GGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: GGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|67699195|gb|BJ959428.1|BJ959428
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|67570056|gb|BJ942880.1|BJ942880
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162241897|gb|FC414421.1|FC414421
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162274511|gb|FC450746.1|FC450746
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162251238|gb|FC428517.1|FC428517
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162193109|gb|FC371494.1|FC371494
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|100406447|gb|BY955631.1|BY955631
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|67572822|gb|BJ945646.1|BJ945646
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162195051|gb|FC371352.1|FC371352
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162253520|gb|FC429543.1|FC429543
EST:     CTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: CTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162219018|gb|FC394913.1|FC394913
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|100429840|gb|BY978115.1|BY978115
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|208374875|gb|DC956148.1|DC956148
EST:     AGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: AGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162219285|gb|FC395281.1|FC395281
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162274366|gb|FC450393.1|FC450393
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162237110|gb|FC413269.1|FC413269
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|100358347|gb|BY983859.1|BY983859
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162216521|gb|FC392418.1|FC392418
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|7207165|gb|AW561168.1|AW561168
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGATGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|100373966|gb|BY967879.1|BY967879
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAAGACTTCGACAG                         GTACCANGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCCG
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCC-G
EST: gi|100411930|gb|BY992410.1|BY992410
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162274365|gb|FC450392.1|FC450392
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|100385042|gb|BY987505.1|BY987505
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|19790106|gb|BQ041699.1|BQ041699
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|67577835|gb|BJ950002.1|BJ950002
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162216522|gb|FC392419.1|FC392419
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|100413952|gb|BY975050.1|BY975050
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|208359589|gb|DC943159.1|DC943159
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162160912|gb|FC337469.1|FC337469
EST:     TATGGATACGATCCTTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|67720541|gb|BJ970800.1|BJ970800
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|208346153|gb|DC917106.1|DC917106
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162153133|gb|FC329539.1|FC329539
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|100374459|gb|BY985801.1|BY985801
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|67572500|gb|BJ945324.1|BJ945324
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162241737|gb|FC417264.1|FC417264
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|67568888|gb|BJ941712.1|BJ941712
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|19786216|gb|BQ040450.1|BQ040450
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|208344427|gb|DC916764.1|DC916764
EST:     TA-NGATACGATCCCTTCGGGTTGTCNAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|67695872|gb|BJ956105.1|BJ956105
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162156102|gb|FC332269.1|FC332269
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|100384673|gb|BY950663.1|BY950663
EST:     TATGGATACGATCCCTTCGGCTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|18343015|gb|BJ175052.1|BJ175052
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|100446890|gb|CJ971189.1|CJ971189
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|100452434|gb|CJ975269.1|CJ975269
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|208367634|gb|DC954993.1|DC954993
EST:     AAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: AAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|100392679|gb|BY971830.1|BY971830
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCG
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGG-CATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCG
EST: gi|162237661|gb|FC413692.1|FC413692
EST:     GTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: GTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162264448|gb|FC441121.1|FC441121
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162241736|gb|FC417263.1|FC417263
EST:     CAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: CAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|208384855|gb|DC907468.1|DC907468
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|67574114|gb|BJ946938.1|BJ946938
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162153189|gb|FC329595.1|FC329595
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|18327358|gb|BJ159360.1|BJ159360
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162160913|gb|FC337470.1|FC337470
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|208375644|gb|DC902861.1|DC902861
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|208382319|gb|DC919307.1|DC919307
EST:     AGCCAGAGGANTTCGACAG                         GTACCANGCATACGAGCTGATCCATGCGCGTTGGGNTATGTTGGGAGCCGC
genomic: AGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|208376708|gb|DC902917.1|DC902917
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162251237|gb|FC428516.1|FC428516
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|100415652|gb|BY992938.1|BY992938
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|208390232|gb|DC941997.1|DC941997
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
EST: gi|162225310|gb|FC402076.1|FC402076
EST:     TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAG                         GTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC
genomic: TATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 171

CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatcc ... gtttcttcagGTACCAGGCATACGAGCTGATCCATGCGCGTTGGGCTATGTTGGGAGCCGCTGGGTTTGTTCTTCCCGAGGCATTCAACAAGTTCGGAGCCGTCTGCGGC




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATGGATACGATCCCTTCGGTTTGTCAAAGAAGCCAGAGGACTTCGACAGgtaaatatccgatatgtttttgtttctcatttaccacgacgatgtcgcgatttggagtctacgacttaaatttttctgacggaaatgtttcttcag

- - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - AGAGGA