Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCCAGTGAAGAAGGCCGCTGGAAAGGCAGCCAGCGCTGTGAAGAAGGCGAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattggcgagtcgctctgcaatttgggccttgtggattgtaagagttgaattgcggggttacagatgatctacgcttagggggcttctcttttcg...

Basic information

species Physcomitrella patens
transcript PP1S628_7V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162202902|gb|FC380287.1|FC380287
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162174525|gb|FC350180.1|FC350180
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162161781|gb|FC337909.1|FC337909
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162225032|gb|FC401448.1|FC401448
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|208347413|gb|DC909748.1|DC909748
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|67572872|gb|BJ945696.1|BJ945696
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|100410674|gb|BY992213.1|BY992213
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|208346866|gb|DC905424.1|DC905424
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|100376765|gb|BY949454.1|BY949454
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|208380608|gb|DC903198.1|DC903198
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162247403|gb|FC421446.1|FC421446
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|67570056|gb|BJ942880.1|BJ942880
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162241897|gb|FC414421.1|FC414421
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162274511|gb|FC450746.1|FC450746
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|67702050|gb|BJ962283.1|BJ962283
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAA
EST: gi|162193109|gb|FC371494.1|FC371494
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|100406447|gb|BY955631.1|BY955631
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|67572822|gb|BJ945646.1|BJ945646
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162195051|gb|FC371352.1|FC371352
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162219018|gb|FC394913.1|FC394913
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|100429840|gb|BY978115.1|BY978115
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162219285|gb|FC395281.1|FC395281
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162274366|gb|FC450393.1|FC450393
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162237110|gb|FC413269.1|FC413269
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|100358347|gb|BY983859.1|BY983859
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|7207165|gb|AW561168.1|AW561168
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|100373966|gb|BY967879.1|BY967879
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|100411930|gb|BY992410.1|BY992410
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|100385042|gb|BY987505.1|BY987505
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|19790106|gb|BQ041699.1|BQ041699
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|67577835|gb|BJ950002.1|BJ950002
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162216522|gb|FC392419.1|FC392419
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|100413952|gb|BY975050.1|BY975050
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|208359589|gb|DC943159.1|DC943159
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|67720541|gb|BJ970800.1|BJ970800
EST:     TCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: TCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162153133|gb|FC329539.1|FC329539
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|100374459|gb|BY985801.1|BY985801
EST:     GAACACAAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|67572500|gb|BJ945324.1|BJ945324
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162241737|gb|FC417264.1|FC417264
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|67568888|gb|BJ941712.1|BJ941712
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|19786216|gb|BQ040450.1|BQ040450
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162156102|gb|FC332269.1|FC332269
EST:     GAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|100384673|gb|BY950663.1|BY950663
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|18343015|gb|BJ175052.1|BJ175052
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|100446890|gb|CJ971189.1|CJ971189
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|100452434|gb|CJ975269.1|CJ975269
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|100392679|gb|BY971830.1|BY971830
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162264448|gb|FC441121.1|FC441121
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|208384855|gb|DC907468.1|DC907468
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|67574114|gb|BJ946938.1|BJ946938
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162153189|gb|FC329595.1|FC329595
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|18327358|gb|BJ159360.1|BJ159360
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162160913|gb|FC337470.1|FC337470
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|208375644|gb|DC902861.1|DC902861
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|208376708|gb|DC902917.1|DC902917
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|100415652|gb|BY992938.1|BY992938
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|208390232|gb|DC941997.1|DC941997
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
EST: gi|162225310|gb|FC402076.1|FC402076
EST:     GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACG                         GTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA
genomic: GAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 115

GCGCCAGTGAAGAAGGCCGCTGGAAAGGCAGCCAGCGCTGTGAAGAAGGCGAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattg ... gacaacgcagGTCCTGATAGGAGGATTTACTTGCCCGAGGGTCTTTTGGCCAAGGATGAGATTCCTGCGTACCTCACCGGAGAAGTCCCCGGAGA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGCCAGTGAAGAAGGCCGCTGGAAAGGCAGCCAGCGCTGTGAAGAAGGCGAACACTAAGGTGAATGTTCCCAGCAACGAGGAGTTGGCCAAGTGGTACGgtaagtattggcgagtcgctctgcaatttgggccttgtggattgtaagagttgaattgcggggttacagatgatctacgcttagggggcttctcttttcg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG