1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtgaacaatgacagttcattttgttgtcattcatggtagtctttgttcttcttacctggtgtgacttctagttgacaatatcaattggggatgaaacagAGGAAGTGCGCCAGAACTGTTTGAACTGCTATTAGAAGATAACCCCAATTTTTGTGAAGATTTTCTGAAGCAACCAGCGATTTCCTTTGGTGGGGCTGTT
species | Physcomitrella patens |
transcript | PP1S61_5V6.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGCAACTTATGAATGCATCCTCTGCACACGAAGTAGAAATTCTATTGAG AGGAAGTGCGCCAGAACTGTTTGAACTGCTATTAGAAGATAACCCCAATTTEST: gi|100358879|gb|BY946734.1|BY946734
genomic: AAGCAACTTATGAATGCATCCTCTGCACACGAAGTAGAAATTCTATTGAGgtcagtatgt ... gatgaaacagAGGAAGTGCGCCAGAACTGTTTGAACTGCTATTAGAAGATAACCCCAATTT
EST: AAGCAACTTATGAATGCATCCTCTGCACACGAAGTAGAAATTCTATTGAG AGGAAGTGCGCCAGAACTGTTTGAACTGCTATTAGAAGAEST: gi|208384441|gb|DC928192.1|DC928192
genomic: AAGCAACTTATGAATGCATCCTCTGCACACGAAGTAGAAATTCTATTGAGgtcagtatgt ... gatgaaacagAGGAAGTGCGCCAGAACTGTTTGAACTGCTATTAGAAGA
EST: AAGCAACTTATGAATGCATCCTCTGCACACGAAGTAGAAATTCTATTGAG AGGAAGTGCGCCAGAACTGTTTGAACTGCTATTAGAAGATAACCCCAATTTEST: gi|162186053|gb|FC361881.1|FC361881
genomic: AAGCAACTTATGAATGCATCCTCTGCACACGAAGTAGAAATTCTATTGAGgtcagtatgt ... gatgaaacagAGGAAGTGCGCCAGAACTGTTTGAACTGCTATTAGAAGATAACCCCAATTT
EST: GCACACGAAGTAGAAATTCTATTGAG AGGAAGTGCGCCAGAACTGTTTGAACTGCTATTAGAAGATAACCCCAATTTEST: gi|37829622|gb|BJ587634.1|BJ587634
genomic: GCACACGAAGTAGAAATTCTATTGAGgtcagtatgt ... gatgaaacagAGGAAGTGCGCCAGAACTGTTTGAACTGCTATTAGAAGATAACCCCAATTT
EST: GAAGTAGAAATTCTATTGAG AGGAAGTGCGCCAGAACTGTTTGAACTGCTATTAGAAGATAACCCCAATTT
genomic: GAAGTAGAAATTCTATTGAGgtcagtatgt ... gatgaaacagAGGAAGTGCGCCAGAACTGTTTGAACTGCTATTAGAAGATAACCCCAATTT
gttcttcttacctggtgtgacttctagttgacaatatcaattggggatgaaacagAGGAAGTGCGCCAGAACTGTTTGAACTGCTATTAGAAGATAACCCCAATTTTTGTGAAGATTTTCTGAAGCAACCAGCGATTTCCTTTGGTGGGGCTGTT
aatatcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgaacaatgacagttcattttgttgtcattcatggtagtctttgttcttcttacctggtgtgacttctagttgacaatatcaattggggatgaaacagAGGAAGTGCGCCAGAACTGTTTGAACTGCTATTAGAAGATAACCCCAATTTTTGTGAAGATTTTCTGAAGCAACCAGCGATTTCCTTTGGTGGGGCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT