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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcggctagttctgtcaacacagggttttcaaatgaagtgactcgagcttgcaatgttgtcctgtgtgcatattcattttggacattggtaatgaacgcagAGAAAATTTGACTATTCGAACGAGCCCGGGCTGTTGAGTTTTGGTGTTAGCCGGAACGCACTGGTAGCATGGTTGCAATGTAGCCTTCATGAGAG

Basic information

species Physcomitrella patens
transcript PP1S61_5V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18350301|gb|BJ182352.1|BJ182352
EST:     TTCTCAATCAGCTCGTGGGCAGCTGCACGCACCTACCAAATGGAAAAAAG                         AGAAAATTTGACTATTCGAA
genomic: TTCTCAATCAGCTCGTGGGCAGCTGCACGCACCTACCAAATGGAAAAAAGgtaagtaagc ... atgaacgcagAGAAAATTTGACTATTCGAA
EST: gi|100358879|gb|BY946734.1|BY946734
EST:     TTCTCAATCAGCTCGTGGGCAGCTGCACGCACCTACCAAATGGAAAAAAG                         AGAAAATTTGACTATTCGAACGAGCCCGGGCTGTTGAGTTTTGGTGTTAGC
genomic: TTCTCAATCAGCTCGTGGGCAGCTGCACGCACCTACCAAATGGAAAAAAGgtaagtaagc ... atgaacgcagAGAAAATTTGACTATTCGAACGAGCCCGGGCTGTTGAGTTTTGGTGTTAGC
EST: gi|162186054|gb|FC361882.1|FC361882
EST:     TTCTCAATCAGCTCGTGGGCAGCTGCACGCACCTACCAAATGGAAAAAAG                         AGAAAATTTGACTATTCGAACGAGCCCGGGCTGTTGAGTTTTGGTGTTAGC
genomic: TTCTCAATCAGCTCGTGGGCAGCTGCACGCACCTACCAAATGGAAAAAAGgtaagtaagc ... atgaacgcagAGAAAATTTGACTATTCGAACGAGCCCGGGCTGTTGAGTTTTGGTGTTAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcttgcaatgttgtcctgtgtgcatattcattttggacattggtaatgaacgcagAGAAAATTTGACTATTCGAACGAGCCCGGGCTGTTGAGTTTTGGTGTTAGCCGGAACGCACTGGTAGCATGGTTGCAATGTAGCCTTCATGAGAG
                       atattcatttt  TA-rich tract