1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttttggcgaggtagcgtagtcgtgcttgttgaggtgaaggatgtaaggttgaggttcctatgattgacaagaattcggatattgctgactggatttgtagGAGTATTGCGAAATGCTGCAGCACGGACCAGTAGGGTGTCAAGCGAGCCGCCACTTCCAACTCAATGTGCCCAAGCTTCCCTTACCGTGTGAGCCTCTCG
species | Physcomitrella patens |
transcript | PP1S61_5V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATTGTGCCGATCACTCGCCGGAATCCTATTTCTCTCTTCGATCTCAG GAGTATTGCGAAATGCTGCAGCACGGACCAGTAGGGTGTCAAGCGAGCCGCEST: gi|18346890|gb|BJ178935.1|BJ178935
genomic: GATTGTGCCGATCACTCGCCGGAATCCTATTTCTCTCTTCGATCTCAGgttcgtgctt ... ggatttgtagGAGTATTGCGAAATGCTGCAGCACGGACCAGTAGGGTGTCAAGCGAGCCGC
EST: GATTGTGCCGATCACTCGCCGGAATCCTATTTCTCTCTTCGATCTCAG GAGTATTGCGAAATGCTGCAGCACGGACCAGTAGGGTGTCAAGCGAGCCGCEST: gi|162186054|gb|FC361882.1|FC361882
genomic: GATTGTGCCGATCACTCGCCGGAATCCTATTTCTCTCTTCGATCTCAGgttcgtgctt ... ggatttgtagGAGTATTGCGAAATGCTGCAGCACGGACCAGTAGGGTGTCAAGCGAGCCGC
EST: ATGATTGTGCCGATCACTCGCCGGAATCCTATTTCTCTCTTCGATCTCAG GAGTATTGCGAAATGCTGCAGCACGGACCAGTAGGGTGTCAAGCGAGCCGCEST: gi|208376045|gb|DC914442.1|DC914442
genomic: ATGATTGTGCCGATCACTCGCCGGAATCCTATTTCTCTCTTCGATCTCAGgttcgtgctt ... ggatttgtagGAGTATTGCGAAATGCTGCAGCACGGACCAGTAGGGTGTCAAGCGAGCCGC
EST: ATGATTGTGCCGATCACTCGCCGGAATCCTATTTCTCTCTTCGATCTCAG GAGTATTGCGAAATGCTGCAGCACGGACCAGTAGGGTGTCAAGCGAGCCGCEST: gi|18352734|gb|BJ184789.1|BJ184789
genomic: ATGATTGTGCCGATCACTCGCCGGAATCCTATTTCTCTCTTCGATCTCAGgttcgtgctt ... ggatttgtagGAGTATTGCGAAATGCTGCAGCACGGACCAGTAGGGTGTCAAGCGAGCCGC
EST: ATGATTGTGCCGATCACTCGCCGGAATCCTATTTCTCTCTTCGATCTCAG GAGTATTGNGAAATGCTGCAGCACGGACCAGTANGGTGTCAAGCGAGCCGC
genomic: ATGATTGTGCCGATCACTCGCCGGAATCCTATTTCTCTCTTCGATCTCAGgttcgtgctt ... ggatttgtagGAGTATTGCGAAATGCTGCAGCACGGACCAGTAGGGTGTCAAGCGAGCCGC
aggttgaggttcctatgattgacaagaattcggatattgctgactggatttgtagGAGTATTGCGAAATGCTGCAGCACGGACCAGTAGGGTGTCAAGCGAGCCGCCACTTCCAACTCAATGTGCCCAAGCTTCCCTTACCGTGTGAGCCTCTCG
tgctgac putative branch site (score: 6)
tatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttggcgaggtagcgtagtcgtgcttgttgaggtgaaggatgtaaggttgaggttcctatgattgacaagaattcggatattgctgactggatttgtagGAGTATTGCGAAATGCTGCAGCACGGACCAGTAGGGTGTCAAGCGAGCCGCCACTTCCAACTCAATGTGCCCAAGCTTCCCTTACCGTGTGAGCCTCTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT