1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacatcatacaacatctaactttcccagaacgggcaaacggatttgatcttctgtgtcagaatgtcgtaagatgtttgtcttgttagaacgttactacggaatcttagaagttggttcgaggaattggcagATGGAAATGGGAGCGATCAACAATTCTATGCGCGAAGGGATCCGCGTTCGTACAACATCCTGCTTACCTCAAGAGCTGTAAAAGCCTTCCAAGGGGCAGG
species | Physcomitrella patens |
transcript | PP1S61_5V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGTCCATCTGTTCGATAAACGTGCTGGCGCTCCTTCTTCTCCTCAGCACG ATGGAAATGGGAGCGATCAACAATTCTATGCGCGAAGGGATCCGCGTTCGTEST: gi|18346890|gb|BJ178935.1|BJ178935
genomic: CGTCCATCTGTTCGATAAACGTGCTGGCGCTCCTTCTTCTCCTCAGCACGgtacatcata ... gaattggcagATGGAAATGGGAGCGATCAACAATTCTATGCGCGAAGGGATCCGCGTTCGT
EST: CGTCCATCTGTTCGATAAACGTGCTGGCGCTCCTTCTTCTCCTCAGCACG ATGGAAATGGGAGCGATCAACAATTCTATGCGCGAAGGGATCCGCGTTCGTEST: gi|100358879|gb|BY946734.1|BY946734
genomic: CGTCCATCTGTTCGATAAACGTGCTGGCGCTCCTTCTTCTCCTCAGCACGgtacatcata ... gaattggcagATGGAAATGGGAGCGATCAACAATTCTATGCGCGAAGGGATCCGCGTTCGT
EST: CGTGCTGGCGCTCCTTCTTCTCCTCAGCACG ATGGAAATGGGAGCGATCAACAATTCTATGCGCGAAGGGATCCGCGTTCGTEST: gi|162186054|gb|FC361882.1|FC361882
genomic: CGTGCTGGCGCTCCTTCTTCTCCTCAGCACGgtacatcata ... gaattggcagATGGAAATGGGAGCGATCAACAATTCTATGCGCGAAGGGATCCGCGTTCGT
EST: CGTCCATCTGTTCGATAAACGTGCTGGCGCTCCTTCTTCTCCTCAGCACG ATGGAAATGGGAGCGATCAACAATTCTATGCGCGAAGGGATCCGCGTTCGTEST: gi|208376045|gb|DC914442.1|DC914442
genomic: CGTCCATCTGTTCGATAAACGTGCTGGCGCTCCTTCTTCTCCTCAGCACGgtacatcata ... gaattggcagATGGAAATGGGAGCGATCAACAATTCTATGCGCGAAGGGATCCGCGTTCGT
EST: CGTCCATCTGTTCGATAAACGTGCTGGCGCTCCTTCTTCTCCTCAGCACG ATGGAAATGGGAGCGATCAACAATTCTATGCGCGAAGGGATCCGCGTTCGT
genomic: CGTCCATCTGTTCGATAAACGTGCTGGCGCTCCTTCTTCTCCTCAGCACGgtacatcata ... gaattggcagATGGAAATGGGAGCGATCAACAATTCTATGCGCGAAGGGATCCGCGTTCGT
tgtcttgttagaacgttactacggaatcttagaagttggttcgaggaattggcagATGGAAATGGGAGCGATCAACAATTCTATGCGCGAAGGGATCCGCGTTCGTACAACATCCTGCTTACCTCAAGAGCTGTAAAAGCCTTCCAAGGGGCAGG
aatctta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatcatacaacatctaactttcccagaacgggcaaacggatttgatcttctgtgtcagaatgtcgtaagatgtttgtcttgttagaacgttactacggaatcttagaagttggttcgaggaattggcagATGGAAATGGGAGCGATCAACAATTCTATGCGCGAAGGGATCCGCGTTCGTACAACATCCTGCTTACCTCAAGAGCTGTAAAAGCCTTCCAAGGGGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT