1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgtgctcccgtgatttttggttggcatgtctattattttcattagcatagcatgcttgaaattcgtggaggaccgaaccttactagatgcaaattggcagAAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTATTAGCCCACTACCTTCTCCGCCGAGGCTTTTTCGTCCATCTGTTCGATA
species | Physcomitrella patens |
transcript | PP1S61_5V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCT AAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTAEST: gi|18346890|gb|BJ178935.1|BJ178935
genomic: CGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCTgtaagttctg ... aaattggcagAAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTA
EST: CGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCT AAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTAEST: gi|162186054|gb|FC361882.1|FC361882
genomic: CGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCTgtaagttctg ... aaattggcagAAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTA
EST: CGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCT AAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTAEST: gi|208376045|gb|DC914442.1|DC914442
genomic: CGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCTgtaagttctg ... aaattggcagAAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTA
EST: CGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCT AAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTA
genomic: CGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCTgtaagttctg ... aaattggcagAAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTA
catagcatgcttgaaattcgtggaggaccgaaccttactagatgcaaattggcagAAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTATTAGCCCACTACCTTCTCCGCCGAGGCTTTTTCGTCCATCTGTTCGATA
accttac putative branch site (score: 10)
ttgaaatt TA-rich tract