1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAAGTCTGATCGTCATCCGCGGCAATCTCCAGTTGTCGCTATGGCGGTGCCGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCTgtaagttctgaatgagcatgagttgtgtgagtacttatctgtacgttttccagatacgttttctatgatttctgtaaaaacagaacacgttaaagtttta...
species | Physcomitrella patens |
transcript | PP1S61_5V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: CGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCT AAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTAEST: gi|18346890|gb|BJ178935.1|BJ178935
genomic: CGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCTgtaagttctg ... aaattggcagAAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTA
EST: CGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCT AAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTAEST: gi|162186054|gb|FC361882.1|FC361882
genomic: CGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCTgtaagttctg ... aaattggcagAAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTA
EST: CGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCT AAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTAEST: gi|208376045|gb|DC914442.1|DC914442
genomic: CGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCTgtaagttctg ... aaattggcagAAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTA
EST: CGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCT AAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTA
genomic: CGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCTgtaagttctg ... aaattggcagAAGACACTGGGAGAGGTGGTGGTGGTCGGAGCTGGACCGGCTGGGTGTTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGTCTGATCGTCATCCGCGGCAATCTCCAGTTGTCGCTATGGCGGTGCCGCCTGCGGTGGTTCAATCGACAAATCCGGCCGATGTATCTTCCTCATCTgtaagttctgaatgagcatgagttgtgtgagtacttatctgtacgttttccagatacgttttctatgatttctgtaaaaacagaacacgttaaagtttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacagaa