1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tttcgctggaaacagtgagttgtttcttacataaaaagtattctgtactatgtgcccttaatatgtcgtatacgtaagatgggttctttgtgttgtacagGATTGCTTACCAGCAGTTGTGGTCGGACACACGATTTCGACAAATTGAGCTGCAGAAGCGCACCGAGAACACATTGTTCTTCGGTATGCTTTTGGTACTG
species | Physcomitrella patens |
transcript | PP1S61_5V6.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATAATGCTGTTCACCTCCCTCCGCAAACTGGCACCATCAATATTCAAACC GATTGCTTACCAGCAGTTGTGGTCGGACACACGATTTCGACAAATTGAGCTEST: gi|162186423|gb|FC362979.1|FC362979
genomic: GTAATGCTGTTCACCTCCCTCCGCAAACTGGCACCATCAATATTCAAACCgtaagtggac ... tgttgtacagGATTGCTTACCAGCAGTTGTGGTCGGACACACGATTTCGACAAATTGAGCT
EST: GTAATGCTGTTCACCTCCCTCCGCAAACTGGCACCATCAATATTCAAACC GATTGCTTACCAGCAGTTGTGGTCGGACACACGATTTCGACAAATTGAGCTEST: gi|208384441|gb|DC928192.1|DC928192
genomic: GTAATGCTGTTCACCTCCCTCCGCAAACTGGCACCATCAATATTCAAACCgtaagtggac ... tgttgtacagGATTGCTTACCAGCAGTTGTGGTCGGACACACGATTTCGACAAATTGAGCT
EST: GTAATGCTGTTCACCTCCCTCCGCAAACTGGCACCATCAATATTCAAACC GATTGCTTACCAGCAGTTGTGGTCGGACACACGATTTCGACAAATTGAGCTEST: gi|162186053|gb|FC361881.1|FC361881
genomic: GTAATGCTGTTCACCTCCCTCCGCAAACTGGCACCATCAATATTCAAACCgtaagtggac ... tgttgtacagGATTGCTTACCAGCAGTTGTGGTCGGACACACGATTTCGACAAATTGAGCT
EST: GTAATGCTGTTCACCTCCCTCCGCAAACTGGCACCATCAATATTCAAACC GATTGCTTACCAGCAGTTGTGGTCGGACACACGATTTCGACAAATTGAGCTEST: gi|37829622|gb|BJ587634.1|BJ587634
genomic: GTAATGCTGTTCACCTCCCTCCGCAAACTGGCACCATCAATATTCAAACCgtaagtggac ... tgttgtacagGATTGCTTACCAGCAGTTGTGGTCGGACACACGATTTCGACAAATTGAGCT
EST: ATAATGCTGTTCACCTCCCTCCGCAAACTGGCACCATCAATATTCAAACC GATTGCTTACCAGCAGTTGTGGTCGGACACACGATTTCGACAAATTGAGCT
genomic: GTAATGCTGTTCACCTCCCTCCGCAAACTGGCACCATCAATATTCAAACCgtaagtggac ... tgttgtacagGATTGCTTACCAGCAGTTGTGGTCGGACACACGATTTCGACAAATTGAGCT
tactatgtgcccttaatatgtcgtatacgtaagatgggttctttgtgttgtacagGATTGCTTACCAGCAGTTGTGGTCGGACACACGATTTCGACAAATTGAGCTGCAGAAGCGCACCGAGAACACATTGTTCTTCGGTATGCTTTTGGTACTG
ccttaat putative branch site (score: 4)
ttctttgt putative PPT
ttaatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcgctggaaacagtgagttgtttcttacataaaaagtattctgtactatgtgcccttaatatgtcgtatacgtaagatgggttctttgtgttgtacagGATTGCTTACCAGCAGTTGTGGTCGGACACACGATTTCGACAAATTGAGCTGCAGAAGCGCACCGAGAACACATTGTTCTTCGGTATGCTTTTGGTACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC