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...tgagcagaaaacagtcgactaaagtatggtgcataggattaggtcaattgtattttaatataattgcactttaatgctgaatggttacgtgggcctctagATGGTCTTTTAACTACTTCTTTTACAACAAGAAGCAGAAGCGCATACTCTATTTCAGTTCACGATGTGCAAG
species | Physcomitrella patens |
transcript | PP1S207_52V6.3 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTTATTCTCCTGATGCTGAAGGGGATCCTTTTGCTGATACTGGCAGCAT ATGGTCTTTTAACTACTTCTTTTACAACAAGAAGCAGAAGCGCATACTCTAEST: gi|208390449|gb|DC933706.1|DC933706
genomic: AGTTATTCTCCTGATGCTGAAGGGGATCCTTTTGCTGATACTGGCAGCATgtgagtgcta ... gggcctctagATGGTCTTTTAACTACTTCTTTTACAACAAGAAGCAGAAGCGCATACTCTA
EST: AGTTATTCTCCTGATGCTGAAGGGAA-CCTTTTGCTGATACTGGCAACAT ATGGTCTTTTANCTACTTCTTTTACAEST: gi|18363976|gb|BJ196049.1|BJ196049
genomic: AGTTATTCTCCTGATGCTGAAGGGGATCCTTTTGCTGATACTGGCAGCATgtgagtgcta ... gggcctctagATGGTCTTTTAACTACTTCTTTTACA
EST: AGTTATTCTCCTGATGCTGAAGGGGATCCTTTTGCTGATACTGGCAGCAT ATGGTCTTTTAAEST: gi|208367169|gb|DC947847.1|DC947847
genomic: AGTTATTCTCCTGATGCTGAAGGGGATCCTTTTGCTGATACTGGCAGCATgtgagtgcta ... gggcctctagATGGTCTTTTAA
EST: AGTTATTCTCCTGATGCTGAAGGGGATCCTTTTGCTGATACTGGCAACAT ATGGTCTTTTAACTACTTCTTTTACAACAAGAAGCAGAAGCGCATACTCTAEST: gi|208377861|gb|DC906860.1|DC906860
genomic: AGTTATTCTCCTGATGCTGAAGGGGATCCTTTTGCTGATACTGGCAGCATgtgagtgcta ... gggcctctagATGGTCTTTTAACTACTTCTTTTACAACAAGAAGCAGAAGCGCATACTCTA
EST: AGTTATTCTCCTGATGCTGAAGGGGATCCTTTTGCTGATACTGGCAGCAT ATGGTCTTTTAACTACTTCTTTTACAACAAGAAGCAGAAGCGCATACTCTAEST: gi|208398785|gb|DC920733.1|DC920733
genomic: AGTTATTCTCCTGATGCTGAAGGGGATCCTTTTGCTGATACTGGCAGCATgtgagtgcta ... gggcctctagATGGTCTTTTAACTACTTCTTTTACAACAAGAAGCAGAAGCGCATACTCTA
EST: AGTTATTCTCCTGATGCTGAAGGGGATCCTTTTGCTGATACTGGCAGCAT ATGGTCTTTTAACTACTTCTTTTACAACAAGAAGCAGAAGCGCATACTCTAEST: gi|37851281|gb|BJ609289.1|BJ609289
genomic: AGTTATTCTCCTGATGCTGAAGGGGATCCTTTTGCTGATACTGGCAGCATgtgagtgcta ... gggcctctagATGGTCTTTTAACTACTTCTTTTACAACAAGAAGCAGAAGCGCATACTCTA
EST: AGTTATTCTCCTGATGCTGAAGGGGATCCTTTTGCTGATACTGGCAGCAT ATGGTCTTTTAACTACTTCTTTTACAACAAGAAGCAGAAGCGCATACTCTA
genomic: AGTTATTCTCCTGATGCTGAAGGGGATCCTTTTGCTGATACTGGCAGCATgtgagtgcta ... gggcctctagATGGTCTTTTAACTACTTCTTTTACAACAAGAAGCAGAAGCGCATACTCTA
aattgtattttaatataattgcactttaatgctgaatggttacgtgggcctctagATGGTCTTTTAACTACTTCTTTTACAACAAGAAGCAGAAGCGCATACTCTATTTCAGTTCACGATGTGCAAG
cctct CT-rich tract
tattttaatataattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagcagaaaacagtcgactaaagtatggtgcataggattaggtcaattgtattttaatataattgcactttaatgctgaatggttacgtgggcctctagATGGTCTTTTAACTACTTCTTTTACAACAAGAAGCAGAAGCGCATACTCTATTTCAGTTCACGATGTGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC