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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCAGGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAGgtattgacatcattcaaattttagtcctctatgatcattttatgatgcatctctggacggtcatcagaggaggctttggtcattcaggctttgcgatttt...

Basic information

species Physcomitrella patens
transcript PP1S207_52V6.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37841139|gb|BJ599147.1|BJ599147
EST:     ATTTACCTGGTTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAG                         TATGTTGCGACCCCAGCACTTCATTAAAGAACATGGAGTTTTTGCTGCAAA
genomic: ATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAGgtattgacat ... tactgatcagTATGTTGCGACCCCAGCACTTCATTAAAGAACATGGAGTTTTTGCTGCAAA
EST: gi|208390449|gb|DC933706.1|DC933706
EST:     ATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAG                         TATGTTGCGACCCCAGCACTTCATTAAAGAGCATGGAGTTTTTGCTGCAAA
genomic: ATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAGgtattgacat ... tactgatcagTATGTTGCGACCCCAGCACTTCATTAAAGAACATGGAGTTTTTGCTGCAAA
EST: gi|18370449|gb|BJ202051.1|BJ202051
EST:     ATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAG                         TATGTTGCGACCCCAGCACTTCATTAAAGAACATGGAGTTTTTGCTGCAAA
genomic: ATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAGgtattgacat ... tactgatcagTATGTTGCGACCCCAGCACTTCATTAAAGAACATGGAGTTTTTGCTGCAAA
EST: gi|18363976|gb|BJ196049.1|BJ196049
EST:     ATTTACCTGGTTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAG                         TATGTTGCGACCCCAGCACTTCATTAAAGAACATGGAGTTTTTGCTGCAAA
genomic: ATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAGgtattgacat ... tactgatcagTATGTTGCGACCCCAGCACTTCATTAAAGAACATGGAGTTTTTGCTGCAAA
EST: gi|208367169|gb|DC947847.1|DC947847
EST:     ATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAG                         TATGTTGCGACCCCAGCACTTCATTAAAGAGCATGGAGTTTTTGCTGCAAA
genomic: ATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAGgtattgacat ... tactgatcagTATGTTGCGACCCCAGCACTTCATTAAAGAACATGGAGTTTTTGCTGCAAA
EST: gi|208377861|gb|DC906860.1|DC906860
EST:     ATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAG                         TATGTTGCGACCCCAGCACTTCATTAAAGAACATGGAGTTTTTGCTGCAAA
genomic: ATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAGgtattgacat ... tactgatcagTATGTTGCGACCCCAGCACTTCATTAAAGAACATGGAGTTTTTGCTGCAAA
EST: gi|208398785|gb|DC920733.1|DC920733
EST:     ATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAG                         TATGTTGCGACCCCAGCACTTCATTAAAGAACATGGAGTTTTTGCTGCAAA
genomic: ATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAGgtattgacat ... tactgatcagTATGTTGCGACCCCAGCACTTCATTAAAGAACATGGAGTTTTTGCTGCAAA
EST: gi|37851281|gb|BJ609289.1|BJ609289
EST:     ATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAG                         TATGTTGCGACCCCAGCACTTCATTAAAGAACATGGAGTTTTTGCTGCAAA
genomic: ATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAGgtattgacat ... tactgatcagTATGTTGCGACCCCAGCACTTCATTAAAGAACATGGAGTTTTTGCTGCAAA