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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgcagaggcatctctttctatatggctcagcgagattttgtctctaatgatttttttgtgatcatggaaatgttaaccgcttggttcatctgttttcagTCGCAGGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAG

Basic information

species Physcomitrella patens
transcript PP1S207_52V6.3
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37841139|gb|BJ599147.1|BJ599147
EST:     TTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAG                         TCGCAGGACACTAATTTACCTGGTTTTGACCTTGAATCATATGTATCCTGA
genomic: TTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAGgtaattttat ... ctgttttcagTCGCAGGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGA
EST: gi|208390449|gb|DC933706.1|DC933706
EST:     CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAG                         TCGCAGGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGA
genomic: CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAGgtaattttat ... ctgttttcagTCGCAGGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGA
EST: gi|18370449|gb|BJ202051.1|BJ202051
EST:     CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAG                         --G-A---CACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGA
genomic: CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAGgtaattttat ... ctgttttcagTCGCAGGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGA
EST: gi|18363976|gb|BJ196049.1|BJ196049
EST:     CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAG                         TCGCAGGACACTAATTTACCTGGTTTTGACCTTGAATCATATGTATCCTGA
genomic: CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAGgtaattttat ... ctgttttcagTCGCAGGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGA
EST: gi|208367169|gb|DC947847.1|DC947847
EST:     CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAG                         TCGCAGGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGA
genomic: CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAGgtaattttat ... ctgttttcagTCGCAGGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGA
EST: gi|208377861|gb|DC906860.1|DC906860
EST:     CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAG                         TCGCAGGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGA
genomic: CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAGgtaattttat ... ctgttttcagTCGCAGGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGA
EST: gi|208398785|gb|DC920733.1|DC920733
EST:     CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAG                         TCGCAGGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGA
genomic: CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAGgtaattttat ... ctgttttcagTCGCAGGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGA
EST: gi|37851281|gb|BJ609289.1|BJ609289
EST:     CCCTTTGACNTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGC-A-                         ----AGGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGA
genomic: CCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAGgtaattttat ... ctgttttcagTCGCAGGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgatttttttgtgatcatggaaatgttaaccgcttggttcatctgttttcagTCGCAGGACACTAATTTACCTGATTTTGACCTTGAATCATATGTATCCTGACTACGATTTCAG
                          tgttaac  putative branch site (score: 2)
                                            tctgttttc  putative PPT
     atttttttgt  TA-rich tract