1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atcatcggagggtgaataaagctcctgtttctgtccgatcttaacaaatttagacgtgtagcggcatctttcttagtttaatatgttccccatctagcagGTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAAGGGGATCCTTTTGCTGATACTGGCAGCAT
species | Physcomitrella patens |
transcript | PP1S207_52V6.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAG GTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAAEST: gi|208390449|gb|DC933706.1|DC933706
genomic: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAGgtgagtggag ... catctagcagGTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAA
EST: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAG GTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAAEST: gi|18363976|gb|BJ196049.1|BJ196049
genomic: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAGgtgagtggag ... catctagcagGTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAA
EST: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAG GTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAAEST: gi|208367169|gb|DC947847.1|DC947847
genomic: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAGgtgagtggag ... catctagcagGTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAA
EST: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAG GTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAAEST: gi|208377861|gb|DC906860.1|DC906860
genomic: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAGgtgagtggag ... catctagcagGTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAA
EST: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAG GTGATGGCTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAAEST: gi|208398785|gb|DC920733.1|DC920733
genomic: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAGgtgagtggag ... catctagcagGTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAA
EST: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAG GTGATGGCTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAAEST: gi|37851281|gb|BJ609289.1|BJ609289
genomic: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAGgtgagtggag ... catctagcagGTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAA
EST: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAG GTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAA
genomic: TTGGCGAAGAAACAACATTGATGGACAGCATATGGAATGCCATTGATGAGgtgagtggag ... catctagcagGTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAA
aaatttagacgtgtagcggcatctttcttagtttaatatgttccccatctagcagGTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAAGGGGATCCTTTTGCTGATACTGGCAGCAT
gtttaat putative branch site (score: 6)
ttccccatct putative PPT
tttcttagtttaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcatcggagggtgaataaagctcctgtttctgtccgatcttaacaaatttagacgtgtagcggcatctttcttagtttaatatgttccccatctagcagGTGATGACTTTGGAGGATTGTGAAGTATACAGTTATTCTCCTGATGCTGAAGGGGATCCTTTTGCTGATACTGGCAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT