Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtgttcgatttatttatttatttatttatttatttttctcccttcattattgcataattagtatgatttattcagcaatttcttgatatttatgttggtctcgtttgcctcttctgtctcaatcatgagcgggctgttttacagGTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAG

Basic information

species Physcomitrella patens
transcript PP1S207_52V6.3
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208390449|gb|DC933706.1|DC933706
EST:     GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAG                         GTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
genomic: GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGgttggtgttc ... tgttttacagGTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
EST: gi|18370449|gb|BJ202051.1|BJ202051
EST:     GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAG                         GTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
genomic: GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGgttggtgttc ... tgttttacagGTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
EST: gi|18363976|gb|BJ196049.1|BJ196049
EST:     GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAG                         GTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
genomic: GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGgttggtgttc ... tgttttacagGTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
EST: gi|208367169|gb|DC947847.1|DC947847
EST:     GCAAGCTTGCAGGAGNTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAG                         GTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
genomic: GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGgttggtgttc ... tgttttacagGTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
EST: gi|208377861|gb|DC906860.1|DC906860
EST:     GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAG                         GTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
genomic: GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGgttggtgttc ... tgttttacagGTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
EST: gi|37851281|gb|BJ609289.1|BJ609289
EST:     GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTNGGAGCAAGAG                         GTTGTGGATTCATTGGCATATTTACCCTTTGACNTCTCCACTTCGCCTGTT
genomic: GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGgttggtgttc ... tgttttacagGTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatgttggtctcgtttgcctcttctgtctcaatcatgagcgggctgttttacagGTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTTGGGTCCCTTTCTAGTACTGCAAG
                                            ctgtttt  CT-rich tract
                                             tgtttta  TA-rich tract