1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AATAAACGCTTTTCTCTCGCATGTTGATGTGGGAGGATGCATGATTCAAGGTGGCTTGGAGGCATACTCATgtaagttttctctttgaacctaatgtttccgtgagtattgaggatatatatatatatatatatatatatatatatattcacacacacacacatacacata...
species | Physcomitrella patens |
transcript | PP1S207_52V6.3 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TGTTGATGTGGGAGGATGCATGATTCAAGGTGGCTTGGAGGCATACTCAT GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGEST: gi|18370449|gb|BJ202051.1|BJ202051
genomic: TGTTGATGTGGGAGGATGCATGATTCAAGGTGGCTTGGAGGCATACTCATgtaagttttc ... ggttgtgcagGCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAG
EST: TGTTGATGTGGGAGGATGCATGATTCAAGGTGGCTTGGAGGCATACTCAT GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGEST: gi|18363976|gb|BJ196049.1|BJ196049
genomic: TGTTGATGTGGGAGGATGCATGATTCAAGGTGGCTTGGAGGCATACTCATgtaagttttc ... ggttgtgcagGCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAG
EST: TGTTGATGTGGGAGGATGCATGATTCAAGGTGGCTTGGAGGCATACTCAT GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGEST: gi|208367169|gb|DC947847.1|DC947847
genomic: TGTTGATGTGGGAGGATGCATGATTCAAGGTGGCTTGGAGGCATACTCATgtaagttttc ... ggttgtgcagGCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAG
EST: TGTTGATG-GGGAGGATGCATGATTCAAGGTGGC-TGGAGGCATACTCAT GCAAGCTTGCAGGAGNTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGEST: gi|208377861|gb|DC906860.1|DC906860
genomic: TGTTGATGTGGGAGGATGCATGATTCAAGGTGGCTTGGAGGCATACTCATgtaagttttc ... ggttgtgcagGCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAG
EST: TGTTGATGTGGGAGGATGCATGATTCAAGGTGGCTTGGAGGCATACTCAT GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAG
genomic: TGTTGATGTGGGAGGATGCATGATTCAAGGTGGCTTGGAGGCATACTCATgtaagttttc ... ggttgtgcagGCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATAAACGCTTTTCTCTCGCATGTTGATGTGGGAGGATGCATGATTCAAGGTGGCTTGGAGGCATACTCATgtaagttttctctttgaacctaatgtttccgtgagtattgaggatatatatatatatatatatatatatatatatattcacacacacacacatacacata
- - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG