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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGgttggtgttcgatttatttatttatttatttatttatttttctcccttcattattgcataattagtatgatttattcagcaatttcttgatatttatgttggtctcgtttgcctcttctgtctcaatcatgagcgggctgttttacag

Basic information

species Physcomitrella patens
transcript PP1S207_52V6.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208390449|gb|DC933706.1|DC933706
EST:     GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAG                         GTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
genomic: GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGgttggtgttc ... tgttttacagGTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
EST: gi|18370449|gb|BJ202051.1|BJ202051
EST:     GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAG                         GTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
genomic: GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGgttggtgttc ... tgttttacagGTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
EST: gi|18363976|gb|BJ196049.1|BJ196049
EST:     GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAG                         GTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
genomic: GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGgttggtgttc ... tgttttacagGTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
EST: gi|208367169|gb|DC947847.1|DC947847
EST:     GCAAGCTTGCAGGAGNTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAG                         GTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
genomic: GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGgttggtgttc ... tgttttacagGTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
EST: gi|208377861|gb|DC906860.1|DC906860
EST:     GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAG                         GTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
genomic: GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGgttggtgttc ... tgttttacagGTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT
EST: gi|37851281|gb|BJ609289.1|BJ609289
EST:     GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTNGGAGCAAGAG                         GTTGTGGATTCATTGGCATATTTACCCTTTGACNTCTCCACTTCGCCTGTT
genomic: GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGgttggtgttc ... tgttttacagGTTGTGGATTCATTGGCATATTTACCCTTTGACCTCTCCACTTCGCCTGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAAGCTTGCAGGAGTTGATAAGAAGCTGTCACGAAGTTTGGAGCAAGAGgttggtgttcgatttatttatttatttatttatttatttttctcccttcattattgcataattagtatgatttattcagcaatttcttgatatttatgttggtctcgtttgcctcttctgtctcaatcatgagcgggctgttttacag

 CAAGCT
- - - - - - - - - - AAGAAG
- - - - - - - - - -  AGAAGC
- - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - -  GCAAGA