1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtattgccatgtctttaagtttaatgtagtcgtgcaaaacctatatgtttcatatgtgtatcagaattattcatcatgactataactttgcagGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCA
species | Oryza sativa |
transcript | LOC_Os11g24540.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCCAAATATCAGG GTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTGEST: gi|38474789|gb|CF958922.1|CF958922
genomic: CTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTA-CCAAATATCAGGgtattgccat ... aactttgcagGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTG
EST: GCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGG GTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATAATGTTTTCTGGGTGEST: gi|286796|gb|D15603.1|D15603
genomic: GCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGGgtattgccat ... aactttgcagGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTG
EST: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGG GTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTGEST: gi|29664759|gb|CB661034.1|CB661034
genomic: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGGgtattgccat ... aactttgcagGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTG
EST: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGG GTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTGEST: gi|29667214|gb|CB663489.1|CB663489
genomic: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGGgtattgccat ... aactttgcagGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTG
EST: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGG GTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTGEST: gi|29641729|gb|CB646736.1|CB646736
genomic: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGGgtattgccat ... aactttgcagGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTG
EST: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGG GTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTGEST: gi|218478582|gb|FG949084.1|FG949084
genomic: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGGgtattgccat ... aactttgcagGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTG
EST: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGG GTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTGEST: gi|396941284|gb|HO188493.1|HO188493
genomic: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGGgtattgccat ... aactttgcagGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTG
EST: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGG GTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTGEST: gi|27578188|gb|CB000883.1|CB000883
genomic: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGGgtattgccat ... aactttgcagGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTG
EST: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGG GTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTGEST: gi|29677381|gb|CB673656.1|CB673656
genomic: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGGgtattgccat ... aactttgcagGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTG
EST: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGG GTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTGEST: gi|218501626|gb|FG955998.1|FG955998
genomic: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGGgtattgccat ... aactttgcagGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTG
EST: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGG GTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTGEST: gi|58592179|gb|CF990487.1|CF990487
genomic: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGGgtattgccat ... aactttgcagGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTG
EST: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGG GTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTGEST: gi|218504564|gb|FG954781.1|FG954781
genomic: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGGgtattgccat ... aactttgcagGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTG
EST: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGG GTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTG
genomic: TCTGCCTGATGATAACTGTGCTTCAAATGGCACGCTTACCAAATATCAGGgtattgccat ... aactttgcagGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTG
acctatatgtttcatatgtgtatcagaattattcatcatgactataactttgcagGTTGCATCAGCTCTTCTTAGTGCTGCATTTGTGTATGATGTTTTCTGGGTGTTCATTTCACCTCTTATATTCCATGAAAGTGTCATGATTGCA
ctataac putative branch site (score: 40)
aattattcat TA-rich tract