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gtatgaaaaggttaatatgaaatatattattatatatatcctgttaatatagtcgtatttatctgttaaacttcattctttcagAACTTTACAAGATGGTTTGCAGTGACAACGATACTTCCATTAATGTTACAATACCTGTTGTAATGATACCACAGTCAGCTGGAAAAAAGATGAAGGGCCT
species | Oryza sativa |
transcript | LOC_Os11g24540.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCACAGACTGGAGGTGCAGTTGGTTTACTAGTTATCAATGATAATGAAG AACTTTACAAGATGGTTTGCAGTGACAACGATACTTCCATTAATGTTACAAEST: gi|300215497|gb|HO088123.1|HO088123
genomic: TGCACAGACTGGAGGTGCAGTTGGTTTACTAGTTATCAATGATAATGAAGgtatgaaaag ... attctttcagAACTTTACAAGATGGTTTGCAGTGACAACGATACTTCCATTAATGTTACAA
EST: TGCACAGACTGGAGGTGCAGTTGGTTTACTAGTTATCAATGATAATGAAG AACTTTACAAGATGGTTTGCAGTGACAACGATACTTCCATTAATGTTACAAEST: gi|29664758|gb|CB661033.1|CB661033
genomic: TGCACAGACTGGAGGTGCAGTTGGTTTACTAGTTATCAATGATAATGAAGgtatgaaaag ... attctttcagAACTTTACAAGATGGTTTGCAGTGACAACGATACTTCCATTAATGTTACAA
EST: TGCACAGACTGGAGGTGCAGTTGGTTTACTAGTTATCAATGATAATGAAG AACTTTACAAGATGGTTTGCAGTGACAACGATACTTCCATTAATGTTACAA
genomic: TGCACAGACTGGAGGTGCAGTTGGTTTACTAGTTATCAATGATAATGAAGgtatgaaaag ... attctttcagAACTTTACAAGATGGTTTGCAGTGACAACGATACTTCCATTAATGTTACAA
ttatatatatcctgttaatatagtcgtatttatctgttaaacttcattctttcagAACTTTACAAGATGGTTTGCAGTGACAACGATACTTCCATTAATGTTACAATACCTGTTGTAATGATACCACAGTCAGCTGGAAAAAAGATGAAGGGCCT
tgttaat putative branch site (score: 46)
cttcattctttc putative PPT
tatttatctgttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaaaaggttaatatgaaatatattattatatatatcctgttaatatagtcgtatttatctgttaaacttcattctttcagAACTTTACAAGATGGTTTGCAGTGACAACGATACTTCCATTAATGTTACAATACCTGTTGTAATGATACCACAGTCAGCTGGAAAAAAGATGAAGGGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG