1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tgcataaatgttgactagttgaagtgaaattgtacttttgaattagtagtttatggtaatacaaagtatgcatgctaacaagaatgttcttttgctgcagTGGAGGTGCAGCTATATTCACCAAATCGACCAGTTGTAGACCTTTCAGCATGCTTCTTGTGGATAATGGCTATAGGAACCATAGTTTGTGCTTCACTCTG
species | Oryza sativa |
transcript | LOC_Os11g24540.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAGTCAGCTGGAAAAAAGATGAAGGGCCTCTTGGATCAGGGAGCAAGGC TGGAGGTGCAGCTATATTCACCAAATCGACCAGTTGTAGACCTTTCAGCATEST: gi|300215497|gb|HO088123.1|HO088123
genomic: ACAGTCAGCTGGAAAAAAGATGAAGGGCCTCTTGGATCAGGGAGCAAGGCgtaagtcagt ... tttgctgcagTGGAGGTGCAGCTATATTCACCAAATCGACCAGTTGTAGACCTTTCAGCAT
EST: ACAGTCAGCTGGAAAAAAGATGAAGGGCCTCTTGGATCAGGGAGCAAGGC TGGAGGTGCAGCTATATTCACCAAATCGACCAGTTGTAGACCTTTCAGCATEST: gi|396941284|gb|HO188493.1|HO188493
genomic: ACAGTCAGCTGGAAAAAAGATGAAGGGCCTCTTGGATCAGGGAGCAAGGCgtaagtcagt ... tttgctgcagTGGAGGTGCAGCTATATTCACCAAATCGACCAGTTGTAGACCTTTCAGCAT
EST: ACAGTCAGCTGGAAAAAAGATGAAGGGCCTCTTGGATCAGGGAGCAAGGC TGGAGGTGCAGCTATATTCACCAAATCGACCAGTTGTAGACCTTTCAGCATEST: gi|29664758|gb|CB661033.1|CB661033
genomic: ACAGTCAGCTGGAAAAAAGATGAAGGGCCTCTTGGATCAGGGAGCAAGGCgtaagtcagt ... tttgctgcagTGGAGGTGCAGCTATATTCACCAAATCGACCAGTTGTAGACCTTTCAGCAT
EST: ACAGTCAGCTGGAAAAAAGATGAAGGGCCTCTTGGATCAGGGAGCAAGGC TGGAGGTGCAGCTATATTCACCAAATCGACCAGTTGTAGACCTTTCAGCAT
genomic: ACAGTCAGCTGGAAAAAAGATGAAGGGCCTCTTGGATCAGGGAGCAAGGCgtaagtcagt ... tttgctgcagTGGAGGTGCAGCTATATTCACCAAATCGACCAGTTGTAGACCTTTCAGCAT
gtagtttatggtaatacaaagtatgcatgctaacaagaatgttcttttgctgcagTGGAGGTGCAGCTATATTCACCAAATCGACCAGTTGTAGACCTTTCAGCATGCTTCTTGTGGATAATGGCTATAGGAACCATAGTTTGTGCTTCACTCTG
tgctaac putative branch site (score: 52)
ttcttttgct putative PPT
taatacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcataaatgttgactagttgaagtgaaattgtacttttgaattagtagtttatggtaatacaaagtatgcatgctaacaagaatgttcttttgctgcagTGGAGGTGCAGCTATATTCACCAAATCGACCAGTTGTAGACCTTTCAGCATGCTTCTTGTGGATAATGGCTATAGGAACCATAGTTTGTGCTTCACTCTG
tgcataa
- - - -atgttga
- - - - - - - - - - -aagtgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - atacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaga